ProtXMLFile Member List

This is the complete list of members for ProtXMLFile, including all inherited members.

ActionMode enum name	XMLHandler	protected
asBool_(const std::string &in) const	XMLHandler	inlineprotected
asDateTime_(std::string date_string) const	XMLHandler	inlineprotected
asDouble_(const std::string &in) const	XMLHandler	inlineprotected
asFloat_(const std::string &in) const	XMLHandler	inlineprotected
asInt_(const std::string &in) const	XMLHandler	inlineprotected
asInt_(const XMLCh *in) const	XMLHandler	inlineprotected
asUInt_(const std::string &in) const	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) override	XMLHandler	protected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) const	XMLHandler	protected
cv_terms_	XMLHandler	protected
cvParamToValue(const ControlledVocabulary &cv, const std::string &parent_tag, const std::string &accession, const std::string &name, const std::string &value, const std::string &unit_accession) const	XMLHandler	protected
cvParamToValue(const ControlledVocabulary &cv, const CVTerm &raw_term) const	XMLHandler	protected
cvStringToEnum_(const Size section, const std::string &term, const char *message, const SignedSize result_on_error=0)	XMLHandler	protected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override	ProtXMLFile	protected
enforced_encoding_	XMLFile	protected
enforceEncoding_(const std::string &encoding)	XMLFile	protected
equal_(const XMLCh *a, const XMLCh *b) const	XMLHandler	inlineprotected
error(const xercesc::SAXParseException &exception) override	XMLHandler	protected
error(ActionMode mode, const std::string &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
expectList_(const std::string &str) const	XMLHandler	inlineprivate
fatalError(const xercesc::SAXParseException &exception) override	XMLHandler	protected
fatalError(ActionMode mode, const std::string &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
file_	XMLHandler	protected
fromXSDString(const std::string &type, const std::string &value)	XMLHandler	inlineprotectedstatic
getLoadDetail() const	XMLHandler	protectedvirtual
getVersion() const	XMLFile
isValid(const std::string &filename, std::ostream &os)	XMLFile
LD_ALLDATA enum value	XMLHandler	protected
LD_COUNTS_WITHOPTIONS enum value	XMLHandler	protected
LD_RAWCOUNTS enum value	XMLHandler	protected
load(const std::string &filename, ProteinIdentification &protein_ids, PeptideIdentification &peptide_ids)	ProtXMLFile
LOAD enum value	XMLHandler	protected
load_detail_	XMLHandler	protected
LOADDETAIL enum name	XMLHandler	protected
matchModification_(const double mass, const std::string &origin, std::string &modification_description)	ProtXMLFile	protected
open_tags_	XMLHandler	protected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(std::string &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(std::string &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
parse_(const std::string &filename, XMLHandler *handler)	XMLFile	protected
parseBuffer_(const std::string &buffer, XMLHandler *handler)	XMLFile	protected
pep_hit_	ProtXMLFile	protected
pep_id_	ProtXMLFile	protected
prot_id_	ProtXMLFile	protected
protein_group_	ProtXMLFile	protected
ProteinGroup typedef	ProtXMLFile
ProtXMLFile()	ProtXMLFile
registerProtein_(const std::string &protein_name)	ProtXMLFile	protected
reset()	XMLHandler	protected
resetMembers_()	ProtXMLFile	protected
save_(const std::string &filename, XMLHandler *handler) const	XMLFile	protected
schema_location_	XMLFile	protected
schema_version_	XMLFile	protected
setLoadDetail(const LOADDETAIL d)	XMLHandler	protectedvirtual
sm_	XMLHandler	protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override	ProtXMLFile	protected
STORE enum value	XMLHandler	protected
store(const std::string &filename, const ProteinIdentification &protein_ids, const PeptideIdentification &peptide_ids, const std::string &document_id="")	ProtXMLFile
version_	XMLHandler	protected
warning(const xercesc::SAXParseException &exception) override	XMLHandler	protected
warning(ActionMode mode, const std::string &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
writeTo(std::ostream &)	XMLHandler	protectedvirtual
writeUserParam_(const std::string &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const	XMLHandler	protected
writeXMLEscape(const std::string &to_escape)	XMLHandler	inlineprotectedstatic
XMLFile()	XMLFile
XMLFile(const std::string &schema_location, const std::string &version)	XMLFile
XMLHandler(const std::string &filename, const std::string &version)	XMLHandler	protected
XMLHandler()	XMLHandler	private
~XMLFile()	XMLFile	virtual
~XMLHandler() override	XMLHandler	protected