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ResidueModification Member List

This is the complete list of members for ResidueModification, including all inherited members.

AA_SUBSTITUTION enum valueResidueModification
addSynonym(const String &synonym)ResidueModification
ANYWHERE enum valueResidueModification
ARTIFACT enum valueResidueModification
average_mass_ResidueModificationprotected
C_TERM enum valueResidueModification
CHEMICAL_DERIVATIVE enum valueResidueModification
classification_ResidueModificationprotected
combineMods(const ResidueModification *base, const std::set< const ResidueModification * > &addons, bool allow_unknown_masses=false, const Residue *residue=nullptr)ResidueModificationstatic
COTRANSLATIONAL enum valueResidueModification
createUnknownFromMassString(const String &mod, const double mass, const bool delta_mass, const TermSpecificity specificity, const Residue *residue=nullptr)ResidueModificationstatic
diff_average_mass_ResidueModificationprotected
diff_formula_ResidueModificationprotected
diff_mono_mass_ResidueModificationprotected
formula_ResidueModificationprotected
full_id_ResidueModificationprotected
full_name_ResidueModificationprotected
getAverageMass() constResidueModification
getDiffAverageMass() constResidueModification
getDiffFormula() constResidueModification
getDiffMonoMass() constResidueModification
getDiffMonoMassString(const double diff_mono_mass)ResidueModificationstatic
getDiffMonoMassWithBracket(const double diff_mono_mass)ResidueModificationstatic
getFormula() constResidueModification
getFullId() constResidueModification
getFullName() constResidueModification
getId() constResidueModification
getMonoMass() constResidueModification
getMonoMassWithBracket(const double mono_mass)ResidueModificationstatic
getName() constResidueModification
getNeutralLossAverageMasses() constResidueModification
getNeutralLossDiffFormulas() constResidueModification
getNeutralLossMonoMasses() constResidueModification
getOrigin() constResidueModification
getPSIMODAccession() constResidueModification
getSourceClassification() constResidueModification
getSourceClassificationName(SourceClassification classification=NUMBER_OF_SOURCE_CLASSIFICATIONS) constResidueModification
getSynonyms() constResidueModification
getTermSpecificity() constResidueModification
getTermSpecificityName(TermSpecificity term_spec=NUMBER_OF_TERM_SPECIFICITY) constResidueModification
getUniModAccession() constResidueModification
getUniModRecordId() constResidueModification
hasNeutralLoss() constResidueModification
HYPOTHETICAL enum valueResidueModification
id_ResidueModificationprotected
ISOTOPIC_LABEL enum valueResidueModification
isUserDefined() constResidueModification
mono_mass_ResidueModificationprotected
MULTIPLE enum valueResidueModification
N_TERM enum valueResidueModification
name_ResidueModificationprotected
NATURAL enum valueResidueModification
neutral_loss_average_masses_ResidueModificationprotected
neutral_loss_diff_formulas_ResidueModificationprotected
neutral_loss_mono_masses_ResidueModificationprotected
NLINKED_GLYCOSYLATION enum valueResidueModification
NONSTANDARD_RESIDUE enum valueResidueModification
NUMBER_OF_SOURCE_CLASSIFICATIONS enum valueResidueModification
NUMBER_OF_TERM_SPECIFICITY enum valueResidueModification
OLINKED_GLYCOSYLATION enum valueResidueModification
operator!=(const ResidueModification &modification) constResidueModification
operator<(const ResidueModification &modification) constResidueModification
operator=(const ResidueModification &)=defaultResidueModification
operator=(ResidueModification &&) &=defaultResidueModification
operator==(const ResidueModification &modification) constResidueModification
origin_ResidueModificationprotected
OTHER enum valueResidueModification
OTHER_GLYCOSYLATION enum valueResidueModification
POSTTRANSLATIONAL enum valueResidueModification
PRETRANSLATIONAL enum valueResidueModification
PROTEIN_C_TERM enum valueResidueModification
PROTEIN_N_TERM enum valueResidueModification
psi_mod_accession_ResidueModificationprotected
ResidueModification()ResidueModification
ResidueModification(const ResidueModification &)=defaultResidueModification
ResidueModification(ResidueModification &&)=defaultResidueModification
setAverageMass(double mass)ResidueModification
setDiffAverageMass(double mass)ResidueModification
setDiffFormula(const EmpiricalFormula &diff_formula)ResidueModification
setDiffMonoMass(double mass)ResidueModification
setFormula(const String &composition)ResidueModification
setFullId(const String &full_id="")ResidueModification
setFullName(const String &full_name)ResidueModification
setId(const String &id)ResidueModification
setMonoMass(double mass)ResidueModification
setName(const String &name)ResidueModification
setNeutralLossAverageMasses(std::vector< double > average_masses)ResidueModification
setNeutralLossDiffFormulas(const std::vector< EmpiricalFormula > &diff_formulas)ResidueModification
setNeutralLossMonoMasses(std::vector< double > mono_masses)ResidueModification
setOrigin(char origin)ResidueModification
setPSIMODAccession(const String &id)ResidueModification
setSourceClassification(const String &classification)ResidueModification
setSourceClassification(SourceClassification classification)ResidueModification
setSynonyms(const std::set< String > &synonyms)ResidueModification
setTermSpecificity(TermSpecificity term_spec)ResidueModification
setTermSpecificity(const String &name)ResidueModification
setUniModRecordId(const Int &id)ResidueModification
SourceClassification enum nameResidueModification
synonyms_ResidueModificationprotected
term_spec_ResidueModificationprotected
TermSpecificity enum nameResidueModification
toString() constResidueModification
unimod_record_id_ResidueModificationprotected
UNKNOWN enum valueResidueModification
~ResidueModification()ResidueModificationvirtual