SpectrumMetaDataLookup Member List

This is the complete list of members for SpectrumMetaDataLookup, including all inherited members.

addEntry_(Size index, double rt, Int scan_number, const String &native_id)	SpectrumLookup	protected
addMissingIMToPeptideIDs(std::vector< PeptideIdentification > &peptides, const MSExperiment &exp)	SpectrumMetaDataLookup	static
addMissingRTsToPeptideIDs(std::vector< PeptideIdentification > &peptides, const MSExperiment &exp)	SpectrumMetaDataLookup	static
addMissingSpectrumReferences(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false, bool override_spectra_data=false, bool override_spectra_references=false, std::vector< ProteinIdentification > proteins=std::vector< ProteinIdentification >())	SpectrumMetaDataLookup	static
addReferenceFormat(const String &regexp)	SpectrumLookup
default_scan_regexp	SpectrumLookup	static
empty() const	SpectrumLookup
extractScanNumber(const String &native_id, const boost::regex &scan_regexp, bool no_error=false)	SpectrumLookup	static
extractScanNumber(const String &native_id, const String &native_id_type_accession)	SpectrumLookup	static
findByIndex(Size index, bool count_from_one=false) const	SpectrumLookup
findByNativeID(const String &native_id) const	SpectrumLookup
findByReference(const String &spectrum_ref) const	SpectrumLookup
findByRegExpMatch_(const String &spectrum_ref, const String &regexp, const boost::smatch &match) const	SpectrumLookup	protected
findByRT(double rt) const	SpectrumLookup
findByScanNumber(Size scan_number) const	SpectrumLookup
getRegExFromNativeID(const String &native_id)	SpectrumLookup	static
getSpectrumMetaData(Size index, SpectrumMetaData &meta) const	SpectrumMetaDataLookup
getSpectrumMetaData(const MSSpectrum &spectrum, SpectrumMetaData &meta, const boost::regex &scan_regexp=boost::regex(), const std::map< Size, double > &precursor_rts=(std::map< Size, double >()))	SpectrumMetaDataLookup	static
getSpectrumMetaData(const String &spectrum_ref, SpectrumMetaData &meta, MetaDataFlags flags=MDF_ALL) const	SpectrumMetaDataLookup
ids_	SpectrumLookup	protected
isNativeID(const String &id)	SpectrumLookup	static
MDF_ALL	SpectrumMetaDataLookup	static
MDF_MSLEVEL	SpectrumMetaDataLookup	static
MDF_NATIVEID	SpectrumMetaDataLookup	static
MDF_PRECURSORCHARGE	SpectrumMetaDataLookup	static
MDF_PRECURSORMZ	SpectrumMetaDataLookup	static
MDF_PRECURSORRT	SpectrumMetaDataLookup	static
MDF_RT	SpectrumMetaDataLookup	static
MDF_SCANNUMBER	SpectrumMetaDataLookup	static
metadata_	SpectrumMetaDataLookup	protected
MetaDataFlags typedef	SpectrumMetaDataLookup
n_spectra_	SpectrumLookup	protected
operator=(const SpectrumMetaDataLookup &)	SpectrumMetaDataLookup	private
readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp, bool get_precursor_rt=false)	SpectrumMetaDataLookup	inline
OpenMS::SpectrumLookup::readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp)	SpectrumLookup	inline
reference_formats	SpectrumLookup
regexp_name_list_	SpectrumLookup	protected
regexp_names_	SpectrumLookup	protectedstatic
rt_tolerance	SpectrumLookup
rts_	SpectrumLookup	protected
scan_regexp_	SpectrumLookup	protected
scans_	SpectrumLookup	protected
setScanRegExp_(const String &scan_regexp)	SpectrumLookup	protected
setSpectraDataRef(const String &spectra_data)	SpectrumMetaDataLookup	inline
spectra_data_ref	SpectrumMetaDataLookup	protected
SpectrumLookup()	SpectrumLookup
SpectrumLookup(const SpectrumLookup &)	SpectrumLookup	private
SpectrumMetaDataLookup()	SpectrumMetaDataLookup	inline
SpectrumMetaDataLookup(const SpectrumMetaDataLookup &)	SpectrumMetaDataLookup	private
~SpectrumLookup()	SpectrumLookup	virtual
~SpectrumMetaDataLookup() override	SpectrumMetaDataLookup	inline