OpenMS
SpectrumMetaDataLookup Member List

This is the complete list of members for SpectrumMetaDataLookup, including all inherited members.

addEntry_(Size index, double rt, Int scan_number, const String &native_id)SpectrumLookupprotected
addMissingRTsToPeptideIDs(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false)SpectrumMetaDataLookupstatic
addMissingSpectrumReferences(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false, bool override_spectra_data=false, bool override_spectra_references=false, std::vector< ProteinIdentification > proteins=std::vector< ProteinIdentification >())SpectrumMetaDataLookupstatic
addReferenceFormat(const String &regexp)SpectrumLookup
default_scan_regexpSpectrumLookupstatic
empty() constSpectrumLookup
extractScanNumber(const String &native_id, const boost::regex &scan_regexp, bool no_error=false)SpectrumLookupstatic
extractScanNumber(const String &native_id, const String &native_id_type_accession)SpectrumLookupstatic
findByIndex(Size index, bool count_from_one=false) constSpectrumLookup
findByNativeID(const String &native_id) constSpectrumLookup
findByReference(const String &spectrum_ref) constSpectrumLookup
findByRegExpMatch_(const String &spectrum_ref, const String &regexp, const boost::smatch &match) constSpectrumLookupprotected
findByRT(double rt) constSpectrumLookup
findByScanNumber(Size scan_number) constSpectrumLookup
getRegExFromNativeID(const String &native_id)SpectrumLookupstatic
getSpectrumMetaData(Size index, SpectrumMetaData &meta) constSpectrumMetaDataLookup
getSpectrumMetaData(const MSSpectrum &spectrum, SpectrumMetaData &meta, const boost::regex &scan_regexp=boost::regex(), const std::map< Size, double > &precursor_rts=(std::map< Size, double >()))SpectrumMetaDataLookupstatic
getSpectrumMetaData(const String &spectrum_ref, SpectrumMetaData &meta, MetaDataFlags flags=MDF_ALL) constSpectrumMetaDataLookup
ids_SpectrumLookupprotected
isNativeID(const String &id)SpectrumLookupstatic
MDF_ALLSpectrumMetaDataLookupstatic
MDF_MSLEVELSpectrumMetaDataLookupstatic
MDF_NATIVEIDSpectrumMetaDataLookupstatic
MDF_PRECURSORCHARGESpectrumMetaDataLookupstatic
MDF_PRECURSORMZSpectrumMetaDataLookupstatic
MDF_PRECURSORRTSpectrumMetaDataLookupstatic
MDF_RTSpectrumMetaDataLookupstatic
MDF_SCANNUMBERSpectrumMetaDataLookupstatic
metadata_SpectrumMetaDataLookupprotected
MetaDataFlags typedefSpectrumMetaDataLookup
n_spectra_SpectrumLookupprotected
operator=(const SpectrumMetaDataLookup &)SpectrumMetaDataLookupprivate
readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp, bool get_precursor_rt=false)SpectrumMetaDataLookupinline
OpenMS::SpectrumLookup::readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp)SpectrumLookupinline
reference_formatsSpectrumLookup
regexp_name_list_SpectrumLookupprotected
regexp_names_SpectrumLookupprotectedstatic
rt_toleranceSpectrumLookup
rts_SpectrumLookupprotected
scan_regexp_SpectrumLookupprotected
scans_SpectrumLookupprotected
setScanRegExp_(const String &scan_regexp)SpectrumLookupprotected
setSpectraDataRef(const String &spectra_data)SpectrumMetaDataLookupinline
spectra_data_refSpectrumMetaDataLookupprotected
SpectrumLookup()SpectrumLookup
SpectrumLookup(const SpectrumLookup &)SpectrumLookupprivate
SpectrumMetaDataLookup()SpectrumMetaDataLookupinline
SpectrumMetaDataLookup(const SpectrumMetaDataLookup &)SpectrumMetaDataLookupprivate
~SpectrumLookup()SpectrumLookupvirtual
~SpectrumMetaDataLookup() overrideSpectrumMetaDataLookupinline