OpenMS  2.5.0
•All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Properties Friends Macros Modules Pages
FeatureXMLFile Member List

This is the complete list of members for FeatureXMLFile, including all inherited members.

accession_to_id_FeatureXMLFileprotected
ActionMode enum nameXMLHandlerprotected
asBool_(const String &in)XMLHandlerinlineprotected
asDateTime_(String date_string)XMLHandlerinlineprotected
asDouble_(const String &in)XMLHandlerinlineprotected
asFloat_(const String &in)XMLHandlerinlineprotected
asInt_(const String &in)XMLHandlerinlineprotected
asInt_(const XMLCh *in)XMLHandlerinlineprotected
asUInt_(const String &in)XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideFeatureXMLFileprotected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids)XMLHandlerprotected
CMD enum valueProgressLogger
current_chull_FeatureXMLFileprotected
current_feature_FeatureXMLFileprotected
current_logger_ProgressLoggermutableprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
dim_FeatureXMLFileprotected
disable_parsing_FeatureXMLFileprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideFeatureXMLFileprotected
endProgress() constProgressLogger
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
error_message_XMLHandlermutableprotected
errorString()XMLHandlerprotected
expected_size_FeatureXMLFileprotected
expectList_(const String &str) constXMLHandlerinlineprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
FeatureXMLFile()FeatureXMLFile
file_XMLHandlerprotected
getLoadDetail() constXMLHandlerprotectedvirtual
getLogType() constProgressLogger
getOptions()FeatureXMLFile
getOptions() constFeatureXMLFile
getVersion() constXMLFile
GUI enum valueProgressLogger
hull_position_FeatureXMLFileprotected
id_identifier_FeatureXMLFileprotected
identifier_id_FeatureXMLFileprotected
in_description_FeatureXMLFileprotected
isValid(const String &filename, std::ostream &os)XMLFile
last_invoke_ProgressLoggermutableprotected
last_meta_FeatureXMLFileprotected
LD_ALLDATA enum valueXMLHandlerprotected
LD_COUNTS_WITHOPTIONS enum valueXMLHandlerprotected
LD_RAWCOUNTS enum valueXMLHandlerprotected
LOAD enum valueXMLHandlerprotected
load(const String &filename, FeatureMap &feature_map)FeatureXMLFile
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandlerprotected
loadSize(const String &filename)FeatureXMLFile
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
map_FeatureXMLFileprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
open_tags_XMLHandlerprotected
operator=(const ProgressLogger &other)ProgressLogger
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
options_FeatureXMLFileprotected
param_FeatureXMLFileprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
pep_hit_FeatureXMLFileprotected
pep_id_FeatureXMLFileprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
prot_hit_FeatureXMLFileprotected
prot_id_FeatureXMLFileprotected
proteinid_to_accession_FeatureXMLFileprotected
recursion_depth_ProgressLoggerprotectedstatic
reset()XMLHandlerprotected
resetMembers_()FeatureXMLFileprotected
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
search_param_FeatureXMLFileprotected
setLoadDetail(const LOADDETAIL d)XMLHandlerprotectedvirtual
setLogType(LogType type) constProgressLogger
setOptions(const FeatureFileOptions &)FeatureXMLFile
setProgress(SignedSize value) constProgressLogger
size_only_FeatureXMLFileprotected
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideFeatureXMLFileprotected
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
store(const String &filename, const FeatureMap &feature_map)FeatureXMLFile
STORE enum valueXMLHandlerprotected
subordinate_feature_level_FeatureXMLFileprotected
type_ProgressLoggermutableprotected
updateCurrentFeature_(bool create)FeatureXMLFileprotected
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandlerprotected
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandlerprotected
writeFeature_(const String &filename, std::ostream &os, const Feature &feat, const String &identifier_prefix, UInt64 identifier, UInt indentation_level)FeatureXMLFileprotected
writePeptideIdentification_(const String &filename, std::ostream &os, const PeptideIdentification &id, const String &tag_name, UInt indentation_level)FeatureXMLFileprotected
writeTo(std::ostream &)XMLHandlerprotectedvirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlineprotectedstatic
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XMLHandler(const String &filename, const String &version)XMLHandlerprotected
XMLHandler()XMLHandlerprivate
~FeatureXMLFile() overrideFeatureXMLFile
~ProgressLogger()ProgressLogger
~XMLFile()XMLFilevirtual
~XMLHandler() overrideXMLHandlerprotected
Generated on Sat Mar 7 2020 03:23:55 for OpenMS by   doxygen 1.8.16