IDBoostGraph Member List

This is the complete list of members for IDBoostGraph, including all inherited members.

addPeptideAndAssociatedProteinsWithRunInfo_(PeptideIdentification &spectrum, std::unordered_map< unsigned, unsigned > &indexToPrefractionationGroup, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map, std::unordered_map< std::string, ProteinHit * > &accession_map, Size use_top_psms)	IDBoostGraph	private
addPeptideIDWithAssociatedProteins_(PeptideIdentification &spectrum, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map, const std::unordered_map< std::string, ProteinHit * > &accession_map, Size use_top_psms)	IDBoostGraph	private
addVertexWithLookup_(IDPointer &ptr, std::unordered_map< IDPointer, vertex_t, boost::hash< IDPointer >> &vertex_map)	IDBoostGraph	private
annotateIndistProteins(bool addSingletons=true)	IDBoostGraph
annotateIndistProteins_(const Graph &fg, bool addSingletons)	IDBoostGraph	private
applyFunctorOnCCs(const std::function< unsigned long(Graph &)> &functor)	IDBoostGraph
applyFunctorOnCCsST(const std::function< void(Graph &)> &functor)	IDBoostGraph
buildGraph_(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms)	IDBoostGraph	private
buildGraph_(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_unassigned_ids)	IDBoostGraph	private
buildGraphWithRunInfo_(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_unassigned_ids, const ExperimentalDesign &ed)	IDBoostGraph	private
buildGraphWithRunInfo_(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, const ExperimentalDesign &ed)	IDBoostGraph	private
calculateAndAnnotateIndistProteins(bool addSingletons=true)	IDBoostGraph
calculateAndAnnotateIndistProteins_(const Graph &fg, bool addSingletons)	IDBoostGraph	private
ccs_	IDBoostGraph	private
clusterIndistProteinsAndPeptides()	IDBoostGraph
clusterIndistProteinsAndPeptidesAndExtendGraph()	IDBoostGraph
computeConnectedComponents()	IDBoostGraph
edge_t typedef	IDBoostGraph
g	IDBoostGraph	private
getComponent(Size cc)	IDBoostGraph
getDownstreamNodes(vertex_t start, Graph graph, std::vector< NodeType > &result)	IDBoostGraph	inlineprivate
getNrConnectedComponents()	IDBoostGraph
getProteinIDs()	IDBoostGraph
getUpstreamNodes(vertex_t start, Graph graph, std::vector< NodeType > &result)	IDBoostGraph	inlineprivate
getUpstreamNodesNonRecursive(std::queue< vertex_t > &q, Graph graph, int lvl, bool stop_at_first, std::vector< vertex_t > &result)	IDBoostGraph	private
Graph typedef	IDBoostGraph
GraphConst typedef	IDBoostGraph
Graphs typedef	IDBoostGraph
IDBoostGraph(ProteinIdentification &proteins, std::vector< PeptideIdentification > &idedSpectra, Size use_top_psms, bool use_run_info, const boost::optional< const ExperimentalDesign > &ed=boost::optional< const ExperimentalDesign >())	IDBoostGraph
IDBoostGraph(ProteinIdentification &proteins, ConsensusMap &cmap, Size use_top_psms, bool use_run_info, bool use_unassigned_ids, const boost::optional< const ExperimentalDesign > &ed=boost::optional< const ExperimentalDesign >())	IDBoostGraph
IDPointer typedef	IDBoostGraph
IDPointerConst typedef	IDBoostGraph
nrPrefractionationGroups_	IDBoostGraph	private
pepHitVtx_to_run_	IDBoostGraph	private
PeptideNodeSet typedef	IDBoostGraph
printGraph(std::ostream &out, const Graph &fg)	IDBoostGraph	static
ProteinNodeSet typedef	IDBoostGraph
protIDs_	IDBoostGraph	private
resolveGraphPeptideCentric_(Graph &fg)	IDBoostGraph	private
vertex_t typedef	IDBoostGraph