MzTab Member List

This is the complete list of members for MzTab, including all inherited members.

addMetaInfoToOptionalColumns(const std::set< String > &keys, std::vector< MzTabOptionalColumnEntry > &opt, const String &id, const MetaInfoInterface &meta)	MzTab	static
addPepEvidenceToRows(const std::vector< PeptideEvidence > &peptide_evidences, MzTabPSMSectionRow &row, MzTabPSMSectionRows &rows)	MzTab	static
checkSequenceUniqueness_(const std::vector< PeptideIdentification > &curr_pep_ids)	MzTab	protectedstatic
comment_rows_	MzTab	protected
empty_rows_	MzTab	protected
exportConsensusMapToMzTab(const ConsensusMap &consensus_map, const String &filename, const bool first_run_inference_only, const bool export_unidentified_features, const bool export_unassigned_ids, const bool export_subfeatures, const bool export_empty_pep_ids=false, const String &title="ConsensusMap export from OpenMS")	MzTab	static
exportFeatureMapToMzTab(const FeatureMap &feature_map, const String &filename)	MzTab	static
exportIdentificationsToMzTab(const std::vector< ProteinIdentification > &prot_ids, const std::vector< PeptideIdentification > &peptide_ids, const String &filename, bool first_run_inference_only, std::map< std::pair< size_t, size_t >, size_t > &map_run_fileidx_2_msfileidx, std::map< String, size_t > &idrun_2_run_index, bool export_empty_pep_ids=false)	MzTab	static
extractModificationListFromAASequence(const AASequence &aas, const std::vector< String > &fixed_mods=std::vector< String >())	MzTab	static
generateMzTabStringFromFixedModifications(const std::vector< String > &mods)	MzTab	static
generateMzTabStringFromModifications(const std::vector< String > &mods)	MzTab	static
generateMzTabStringFromVariableModifications(const std::vector< String > &mods)	MzTab	static
getCommentRows() const	MzTab
getEmptyRows() const	MzTab
getMetaData() const	MzTab
getNucleicAcidOptionalColumnNames() const	MzTab
getNucleicAcidSectionRows() const	MzTab
getOligonucleotideOptionalColumnNames() const	MzTab
getOligonucleotideSectionRows() const	MzTab
getOptionalColumnNames_(const SectionRows &rows) const	MzTab	inlineprotected
getOSMOptionalColumnNames() const	MzTab
getOSMSectionRows() const	MzTab
getPeptideOptionalColumnNames() const	MzTab
getPeptideSectionRows() const	MzTab
getProteinOptionalColumnNames() const	MzTab
getProteinSectionRows() const	MzTab
getPSMOptionalColumnNames() const	MzTab
getPSMSectionRows() const	MzTab
getSmallMoleculeOptionalColumnNames() const	MzTab
getSmallMoleculeSectionRows() const	MzTab
meta_data_	MzTab	protected
MzTab()	MzTab
nucleic_acid_data_	MzTab	protected
oligonucleotide_data_	MzTab	protected
osm_data_	MzTab	protected
peptide_data_	MzTab	protected
protein_data_	MzTab	protected
psm_data_	MzTab	protected
setCommentRows(const std::map< Size, String > &com)	MzTab
setEmptyRows(const std::vector< Size > &empty)	MzTab
setMetaData(const MzTabMetaData &md)	MzTab
setNucleicAcidSectionRows(const MzTabNucleicAcidSectionRows &nasd)	MzTab
setOligonucleotideSectionRows(const MzTabOligonucleotideSectionRows &onsd)	MzTab
setOSMSectionRows(const MzTabOSMSectionRows &osd)	MzTab
setPeptideSectionRows(const MzTabPeptideSectionRows &psd)	MzTab
setProteinSectionRows(const MzTabProteinSectionRows &psd)	MzTab
setPSMSectionRows(const MzTabPSMSectionRows &psd)	MzTab
setSmallMoleculeSectionRows(const MzTabSmallMoleculeSectionRows &smsd)	MzTab
small_molecule_data_	MzTab	protected
~MzTab()	MzTab	virtual