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IdentificationData Member List

This is the complete list of members for IdentificationData, including all inherited members.

addMetaValues(const MetaInfoInterface &from)MetaInfoInterface
AddressLookup typedefIdentificationData
addScore(QueryMatchRef match_ref, ScoreTypeRef score_ref, double value)IdentificationData
AppliedProcessingStep typedefIdentificationData
AppliedProcessingSteps typedefIdentificationData
calculateCoverages(bool check_molecule_length=false)IdentificationData
checkAppliedProcessingSteps_(const AppliedProcessingSteps &steps_and_scores) constIdentificationDataprotected
checkParentMatches_(const ParentMatches &matches, MoleculeType expected_type) constIdentificationDataprotected
checkScoreTypes_(const std::map< ScoreTypeRef, double > &scores) constIdentificationDataprotected
cleanup(bool require_query_match=true, bool require_identified_sequence=true, bool require_parent_match=true, bool require_parent_group=false, bool require_match_group=false)IdentificationData
clearCurrentProcessingStep()IdentificationData
clearMetaInfo()MetaInfoInterface
createIfNotExists_()MetaInfoInterfaceinlineprotected
current_step_ref_IdentificationDataprotected
data_queries_IdentificationDataprotected
data_query_lookup_IdentificationDataprotected
DataProcessingSoftware typedefIdentificationData
DataProcessingSoftwares typedefIdentificationData
DataProcessingStep typedefIdentificationData
DataProcessingSteps typedefIdentificationData
DataQueries typedefIdentificationData
DataQuery typedefIdentificationData
DataQueryRef typedefIdentificationData
db_search_params_IdentificationDataprotected
db_search_steps_IdentificationDataprotected
DBSearchParam typedefIdentificationData
DBSearchParams typedefIdentificationData
DBSearchSteps typedefIdentificationData
findScoreType(const String &score_name) constIdentificationData
getBestMatchPerQuery(ScoreTypeRef score_ref) constIdentificationData
getCurrentProcessingStep()IdentificationData
getDataProcessingSoftwares() constIdentificationDatainline
getDataProcessingSteps() constIdentificationDatainline
getDataQueries() constIdentificationDatainline
getDBSearchParams() constIdentificationDatainline
getDBSearchSteps() constIdentificationDatainline
getIdentifiedCompounds() constIdentificationDatainline
getIdentifiedOligos() constIdentificationDatainline
getIdentifiedPeptides() constIdentificationDatainline
getInputFiles() constIdentificationDatainline
getKeys(std::vector< String > &keys) constMetaInfoInterface
getKeys(std::vector< UInt > &keys) constMetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) constMetaInfoInterface
getMoleculeQueryMatches() constIdentificationDatainline
getParentMoleculeGroupings() constIdentificationDatainline
getParentMolecules() constIdentificationDatainline
getQueryMatchGroups() constIdentificationDatainline
getScoreTypes() constIdentificationDatainline
IdentificationData()IdentificationDatainline
IdentificationData(const IdentificationData &other)=deleteIdentificationData
IdentificationData(IdentificationData &&other)IdentificationDatainline
identified_compound_lookup_IdentificationDataprotected
identified_compounds_IdentificationDataprotected
identified_oligo_lookup_IdentificationDataprotected
identified_oligos_IdentificationDataprotected
identified_peptide_lookup_IdentificationDataprotected
identified_peptides_IdentificationDataprotected
IdentifiedCompound typedefIdentificationData
IdentifiedCompoundRef typedefIdentificationData
IdentifiedCompounds typedefIdentificationData
IdentifiedMoleculeRef typedefIdentificationData
IdentifiedOligo typedefIdentificationData
IdentifiedOligoRef typedefIdentificationData
IdentifiedOligos typedefIdentificationData
IdentifiedPeptide typedefIdentificationData
IdentifiedPeptideRef typedefIdentificationData
IdentifiedPeptides typedefIdentificationData
IDFilter classIdentificationDatafriend
input_files_IdentificationDataprotected
InputFileRef typedefIdentificationData
InputFiles typedefIdentificationData
insertIntoMultiIndex_(ContainerType &container, const ElementType &element)IdentificationDatainlineprotected
insertIntoMultiIndex_(ContainerType &container, const ElementType &element, AddressLookup &lookup)IdentificationDatainlineprotected
isBetterScore(double first, double second, bool higher_better)IdentificationDatainlinestatic
isMetaEmpty() constMetaInfoInterface
isValidHashedReference_(RefType ref, const AddressLookup &lookup)IdentificationDatainlineprotectedstatic
isValidReference_(RefType ref, ContainerType &container)IdentificationDatainlineprotectedstatic
MassType typedefIdentificationData
MatchGroupRef typedefIdentificationData
meta_MetaInfoInterfaceprotected
MetaInfoInterface()MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexceptMetaInfoInterface
metaRegistry()MetaInfoInterfacestatic
metaValueExists(const String &name) constMetaInfoInterface
metaValueExists(UInt index) constMetaInfoInterface
MoleculeParentMatch typedefIdentificationData
MoleculeQueryMatch typedefIdentificationData
MoleculeQueryMatches typedefIdentificationData
MoleculeType typedefIdentificationData
operator!=(const MetaInfoInterface &rhs) constMetaInfoInterface
operator=(const MetaInfoInterface &rhs)MetaInfoInterface
operator=(MetaInfoInterface &&) noexceptMetaInfoInterface
operator==(const MetaInfoInterface &rhs) constMetaInfoInterface
parent_molecule_groupings_IdentificationDataprotected
parent_molecule_lookup_IdentificationDataprotected
parent_molecules_IdentificationDataprotected
ParentGroupRef typedefIdentificationData
ParentMatches typedefIdentificationData
ParentMolecule typedefIdentificationData
ParentMoleculeGroup typedefIdentificationData
ParentMoleculeGrouping typedefIdentificationData
ParentMoleculeGroupings typedefIdentificationData
ParentMoleculeGroups typedefIdentificationData
ParentMoleculeRef typedefIdentificationData
ParentMolecules typedefIdentificationData
PeakAnnotations typedefIdentificationData
processing_softwares_IdentificationDataprotected
processing_steps_IdentificationDataprotected
ProcessingSoftwareRef typedefIdentificationData
ProcessingStepRef typedefIdentificationData
query_match_groups_IdentificationDataprotected
query_match_lookup_IdentificationDataprotected
query_matches_IdentificationDataprotected
QueryMatchGroup typedefIdentificationData
QueryMatchGroups typedefIdentificationData
QueryMatchRef typedefIdentificationData
registerDataProcessingSoftware(const DataProcessingSoftware &software)IdentificationData
registerDataProcessingStep(const DataProcessingStep &step)IdentificationData
registerDataProcessingStep(const DataProcessingStep &step, SearchParamRef search_ref)IdentificationData
registerDataQuery(const DataQuery &query)IdentificationData
registerDBSearchParam(const DBSearchParam &param)IdentificationData
registerIdentifiedCompound(const IdentifiedCompound &compound)IdentificationData
registerIdentifiedOligo(const IdentifiedOligo &oligo)IdentificationData
registerIdentifiedPeptide(const IdentifiedPeptide &peptide)IdentificationData
registerInputFile(const String &file)IdentificationData
registerMoleculeQueryMatch(const MoleculeQueryMatch &match)IdentificationData
registerParentMolecule(const ParentMolecule &parent)IdentificationData
registerParentMoleculeGrouping(const ParentMoleculeGrouping &grouping)IdentificationData
registerQueryMatchGroup(const QueryMatchGroup &group)IdentificationData
registerScoreType(const ScoreType &score)IdentificationData
removeFromSetIf_(ContainerType &container, PredicateType predicate)IdentificationDatainlineprotectedstatic
removeFromSetIfNotHashed_(ContainerType &container, const AddressLookup &lookup)IdentificationDatainlineprotectedstatic
removeMetaValue(const String &name)MetaInfoInterface
removeMetaValue(UInt index)MetaInfoInterface
score_types_IdentificationDataprotected
ScoreType typedefIdentificationData
ScoreTypeRef typedefIdentificationData
ScoreTypes typedefIdentificationData
SearchParamRef typedefIdentificationData
setCurrentProcessingStep(ProcessingStepRef step_ref)IdentificationData
setMetaValue(const String &name, const DataValue &value)MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)MetaInfoInterface
updateAddressLookup_(const ContainerType &container, AddressLookup &lookup)IdentificationDatainlineprotectedstatic
~MetaInfoInterface()MetaInfoInterface
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