OpenMS  2.7.0
PeakSpectrumCompareFunctor.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2021.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: $
33 // --------------------------------------------------------------------------
34 //
35 #pragma once
36 
39 
40 namespace OpenMS
41 {
42 
52  class OPENMS_DLLAPI PeakSpectrumCompareFunctor :
53  public DefaultParamHandler
54  {
55 
56 public:
57 
60 
63 
66 
69 
71  virtual double operator()(const PeakSpectrum & a, const PeakSpectrum & b) const = 0;
72 
74  virtual double operator()(const PeakSpectrum & a) const = 0;
75 
77  static void registerChildren();
78 
80  static const String getProductName()
81  {
82  return "PeakSpectrumCompareFunctor";
83  }
84 
85  };
86 
87 }
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:93
The representation of a 1D spectrum.
Definition: MSSpectrum.h:71
Base class for compare functors of spectra, that return a similarity value for two spectra.
Definition: PeakSpectrumCompareFunctor.h:54
PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor &source)
assignment operator
virtual double operator()(const PeakSpectrum &a, const PeakSpectrum &b) const =0
function call operator, calculates the similarity
PeakSpectrumCompareFunctor(const PeakSpectrumCompareFunctor &source)
copy constructor
virtual double operator()(const PeakSpectrum &a) const =0
calculates self similarity
~PeakSpectrumCompareFunctor() override
destructor
static void registerChildren()
registers all derived products
PeakSpectrumCompareFunctor()
default constructor
static const String getProductName()
Definition: PeakSpectrumCompareFunctor.h:80
A more convenient string class.
Definition: String.h:61
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47