Base class for compare functors of spectra, that return a similarity value for two spectra. More...

#include <OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h>

Inheritance diagram for PeakSpectrumCompareFunctor:

Collaboration diagram for PeakSpectrumCompareFunctor:

Public Member Functions
	PeakSpectrumCompareFunctor ()
	default constructor More...

	PeakSpectrumCompareFunctor (const PeakSpectrumCompareFunctor &source)
	copy constructor More...

	~PeakSpectrumCompareFunctor () override
	destructor More...

PeakSpectrumCompareFunctor &	operator= (const PeakSpectrumCompareFunctor &source)
	assignment operator More...

virtual double	operator() (const PeakSpectrum &a, const PeakSpectrum &b) const =0
	function call operator, calculates the similarity More...

virtual double	operator() (const PeakSpectrum &a) const =0
	calculates self similarity More...

Public Member Functions inherited from DefaultParamHandler
	DefaultParamHandler (const String &name)
	Constructor with name that is displayed in error messages. More...

	DefaultParamHandler (const DefaultParamHandler &rhs)
	Copy constructor. More...

virtual	~DefaultParamHandler ()
	Destructor. More...

virtual DefaultParamHandler &	operator= (const DefaultParamHandler &rhs)
	Assignment operator. More...

virtual bool	operator== (const DefaultParamHandler &rhs) const
	Equality operator. More...

void	setParameters (const Param &param)
	Sets the parameters. More...

const Param &	getParameters () const
	Non-mutable access to the parameters. More...

const Param &	getDefaults () const
	Non-mutable access to the default parameters. More...

const String &	getName () const
	Non-mutable access to the name. More...

void	setName (const String &name)
	Mutable access to the name. More...

const std::vector< String > &	getSubsections () const
	Non-mutable access to the registered subsections. More...

Static Public Member Functions
static void	registerChildren ()
	registers all derived products More...

static const String	getProductName ()

Static Public Member Functions inherited from DefaultParamHandler
static void	writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")
	Writes all parameters to meta values. More...

Additional Inherited Members
Protected Member Functions inherited from DefaultParamHandler
virtual void	updateMembers_ ()
	This method is used to update extra member variables at the end of the setParameters() method. More...

void	defaultsToParam_ ()
	Updates the parameters after the defaults have been set in the constructor. More...

Protected Attributes inherited from DefaultParamHandler
Param	param_
	Container for current parameters. More...

Param	defaults_
	Container for default parameters. This member should be filled in the constructor of derived classes! More...

std::vector< String >	subsections_
	Container for registered subsections. This member should be filled in the constructor of derived classes! More...

String	error_name_
	Name that is displayed in error messages during the parameter checking. More...

bool	check_defaults_
	If this member is set to false no checking if parameters in done;. More...

bool	warn_empty_defaults_
	If this member is set to false no warning is emitted when defaults are empty;. More...

Detailed Description

Base class for compare functors of spectra, that return a similarity value for two spectra.

PeakSpectrumCompareFunctor classes return a similarity value for a pair of PeakSpectrum objects. The value should be greater equal 0.

Constructor & Destructor Documentation

◆ PeakSpectrumCompareFunctor() [1/2]

PeakSpectrumCompareFunctor ( )

default constructor

◆ PeakSpectrumCompareFunctor() [2/2]

PeakSpectrumCompareFunctor ( const PeakSpectrumCompareFunctor & source )

copy constructor

◆ ~PeakSpectrumCompareFunctor()

~PeakSpectrumCompareFunctor ( )

override

destructor

Member Function Documentation

◆ getProductName()

static const String getProductName ( )

inlinestatic

◆ operator()() [1/2]

virtual double operator() ( const PeakSpectrum & a ) const

pure virtual

calculates self similarity

Implemented in ZhangSimilarityScore, SteinScottImproveScore, SpectrumAlignmentScore, SpectraSTSimilarityScore, PeakAlignment, SpectrumPrecursorComparator, and SpectrumCheapDPCorr.

◆ operator()() [2/2]

virtual double operator()	(	const PeakSpectrum &	a,
		const PeakSpectrum &	b
	)		const

pure virtual

function call operator, calculates the similarity

Implemented in ZhangSimilarityScore, SteinScottImproveScore, SpectrumAlignmentScore, SpectraSTSimilarityScore, PeakAlignment, SpectrumPrecursorComparator, and SpectrumCheapDPCorr.

◆ operator=()

PeakSpectrumCompareFunctor& operator= ( const PeakSpectrumCompareFunctor & source )

assignment operator

◆ registerChildren()

static void registerChildren ( )

static

registers all derived products

Public Member Functions

Static Public Member Functions

Additional Inherited Members