LayerAnnotatorBase Class Reference

#include <OpenMS/VISUAL/LayerData.h>

Inheritance diagram for LayerAnnotatorBase:

Collaboration diagram for LayerAnnotatorBase:

Public Member Functions
	LayerAnnotatorBase (const FileTypes::FileTypeList &supported_types, const String &file_dialog_text, QWidget *gui_lock)
	C'tor with params. More...
bool	annotateWithFileDialog (LayerData &layer, LogWindow &log, const String &current_path) const
bool	annotateWithFilename (LayerData &layer, LogWindow &log, const String &filename) const

Static Public Member Functions
static std::unique_ptr< LayerAnnotatorBase >	getAnnotatorWhichSupports (const FileTypes::Type &type)
static std::unique_ptr< LayerAnnotatorBase >	getAnnotatorWhichSupports (const String &filename)
	see getAnnotatorWhichSupports(const FileTypes::Type& type). Filetype is queried from filename More...

Protected Member Functions
virtual bool	annotateWorker_ (LayerData &layer, const String &filename, LogWindow &log) const =0

Protected Attributes
const FileTypes::FileTypeList	supported_types_
const String	file_dialog_text_
QWidget *	gui_lock_ = nullptr
	optional widget which will be locked when calling annotateWorker_() in child-classes More...

Detailed Description

A base class to annotate layers of specific types with (identification) data @hint Add new derived classes to getAnnotatorWhichSupports() to enable automatic annotation in TOPPView

Constructor & Destructor Documentation

LayerAnnotatorBase()

LayerAnnotatorBase	(	const FileTypes::FileTypeList &	supported_types,
		const String &	file_dialog_text,
		QWidget *	gui_lock
	)

C'tor with params.

Parameters

supported_types	Which identification data types are allowed to be opened by the user in annotate()
file_dialog_text	The header text of the file dialog shown to the user
gui_lock	Optional GUI element which will be locked (disabled) during call to 'annotateWorker_'; can be null_ptr

Member Function Documentation

annotateWithFileDialog()

bool annotateWithFileDialog	(	LayerData &	layer,
		LogWindow &	log,
		const String &	current_path
	)		const

Annotates a layer, writing messages to log and showing QMessageBoxes on errors. The input file is selected via a file-dialog which is opened with current_path as initial path. The filetype is checked to be one of the supported_types_ before the annotateWorker_ function is called as implemented by the derived classes

Referenced by TOPPViewBase::annotateWithAMS(), TOPPViewBase::annotateWithID(), and TOPPViewBase::annotateWithOSW().

annotateWithFilename()

bool annotateWithFilename	(	LayerData &	layer,
		LogWindow &	log,
		const String &	filename
	)		const

Annotates a layer, given a filename from which to load the data. The filetype is checked to be one of the supported_types_ before the annotateWorker_ function is called as implemented by the derived classes

annotateWorker_()

virtual bool annotateWorker_ ( LayerData &  layer, const String &  filename, LogWindow &  log  ) const

protectedpure virtual

abstract virtual worker function to annotate a layer using content from the filename returns true on success

Implemented in LayerAnnotatorOSW, LayerAnnotatorAMS, and LayerAnnotatorPeptideID.

getAnnotatorWhichSupports() [1/2]

static std::unique_ptr<LayerAnnotatorBase> getAnnotatorWhichSupports ( const FileTypes::Type &  type )

static

get a derived annotator class, which supports annotation of the given filetype. If multiple class support this type (currently not the case) an Exception::IllegalSelfOperation will be thrown If NO class supports this type, the unique_ptr points to nothing (.get() == nullptr).

Referenced by TOPPViewBase::loadFiles().

getAnnotatorWhichSupports() [2/2]

static std::unique_ptr<LayerAnnotatorBase> getAnnotatorWhichSupports ( const String &  filename )

static

see getAnnotatorWhichSupports(const FileTypes::Type& type). Filetype is queried from filename

Member Data Documentation

file_dialog_text_

const String file_dialog_text_

protected

gui_lock_

QWidget* gui_lock_ = nullptr

protected

optional widget which will be locked when calling annotateWorker_() in child-classes

supported_types_

const FileTypes::FileTypeList supported_types_

protected