ProteinIdentificationVisualizer Class Reference

Class that displays all meta information for ProteinIdentification objects. More...

#include <OpenMS/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.h>

Inheritance diagram for ProteinIdentificationVisualizer:

Collaboration diagram for ProteinIdentificationVisualizer:

Public Slots
void	store () override
Public Slots inherited from BaseVisualizerGUI
virtual void	store ()=0
	Saves the changes made in the GUI to the object. More...

Public Member Functions
	ProteinIdentificationVisualizer (bool editable=false, QWidget *parent=0, MetaDataBrowser *caller=nullptr)
	Constructor. More...
void	load (ProteinIdentification &s, int tree_item_id)
	Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter. More...
Public Member Functions inherited from BaseVisualizerGUI
	BaseVisualizerGUI (bool editable=false, QWidget *parent=nullptr)
	Constructor. More...
bool	isEditable () const
	Returns if the values are editable. More...
Public Member Functions inherited from BaseVisualizer< ProteinIdentification >
void	load (ProteinIdentification &o)
	Loads the object that is to be edited. More...
virtual	~BaseVisualizer ()

Protected Slots
void	updateTree_ ()
	Updates the tree by calling MetaDataBrowser::updateProteinHits() More...
void	undo_ ()
	Undo the changes made in the GUI. More...

Protected Attributes
MetaDataBrowser *	pidv_caller_
	Pointer to MetaDataBrowser. More...
int	tree_id_
	The id of the item in the tree. More...
Edit fields and buttons
QLineEdit *	engine_
QLineEdit *	engine_version_
QLineEdit *	identification_date_
QLineEdit *	identification_threshold_
QLineEdit *	identifier_
QLineEdit *	score_type_
QComboBox *	higher_better_
QLineEdit *	db_
QLineEdit *	db_version_
QLineEdit *	taxonomy_
QLineEdit *	charges_
QLineEdit *	missed_cleavages_
QLineEdit *	peak_tolerance_
QLineEdit *	precursor_tolerance_
QComboBox *	mass_type_
QLineEdit *	enzyme_
QLineEdit *	filter_threshold_
	Threshold for filtering by score. More...
Protected Attributes inherited from BaseVisualizerGUI
QPushButton *	undo_button_
	Undo button. More...
QGridLayout *	mainlayout_
	The main layout. More...
UInt	row_
	Counter for the current grid row. More...
bool	editable_
	Edit flag. More...
Protected Attributes inherited from BaseVisualizer< ProteinIdentification >
ProteinIdentification *	ptr_
	Pointer to the object that is currently edited. More...
ProteinIdentification	temp_
	Copy of current object used to restore the original values. More...

Additional Inherited Members
Signals inherited from BaseVisualizerGUI
void	sendStatus (std::string status)
	Sends a status message, if date is not in proper format. More...
Protected Member Functions inherited from BaseVisualizerGUI
void	addLabel_ (QString label)
	Adds a label to the grid layout. More...
void	addLabel_ (QString label, UInt row)
	Adds a label to a certain row. More...
void	addLineEdit_ (QLineEdit *&ptr, QString label)
	Adds a line edit field with label to the grid layout. More...
void	addIntLineEdit_ (QLineEdit *&ptr, QString label)
	Adds a line edit field to the grid layout including a int validator. More...
void	addDoubleLineEdit_ (QLineEdit *&ptr, QString label)
	Adds a line edit field to the grid layout including a double validator. More...
void	addLineEditButton_ (QString label, QLineEdit *&ptr1, QPushButton *&ptr2, QString buttonlabel)
	Adds a line edit field with label and button to the next free position in the grid. More...
void	addListView_ (QListWidget *&ptr, QString label)
	Adds a list edit field to the grid layout. More...
void	addTextEdit_ (QTextEdit *&ptr, QString label)
	Adds a text edit field to the grid layout. More...
void	addComboBox_ (QComboBox *&ptr, QString label)
	Adds a drop-down field to the grid layout. More...
void	addBooleanComboBox_ (QComboBox *&ptr, QString label)
	Adds a boolean drop-down field to the grid layout ( 'true'=1, 'false'=0 ). More...
void	fillComboBox_ (QComboBox *&ptr, const std::string *items, int item_count)
	Fills a combo box with string items (the number of strings is determined by item_count). More...
void	addVSpacer_ ()
	Adds vertical spacer. More...
void	addButton_ (QPushButton *&ptr, QString label)
	Adds a button to the next free position in the grid. More...
void	add2Buttons_ (QPushButton *&ptr1, QString label1, QPushButton *&ptr2, QString label2)
	Adds two buttons in a row. More...
void	addSeparator_ ()
	Adds a horizontal line as a separator. More...
void	finishAdding_ ()
	Adds buttons common to all visualizers. More...
Protected Member Functions inherited from BaseVisualizer< ProteinIdentification >
virtual void	update_ ()
	Updates the GUI from the temp_ variable. More...

Detailed Description

Class that displays all meta information for ProteinIdentification objects.

This class provides all functionality to view the meta information of an object of type Identification.

Constructor & Destructor Documentation

ProteinIdentificationVisualizer()

ProteinIdentificationVisualizer	(	bool	editable = false,
		QWidget *	parent = 0,
		MetaDataBrowser *	caller = nullptr
	)

Constructor.

Member Function Documentation

load()

void load	(	ProteinIdentification &	s,
		int	tree_item_id
	)

Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.

store

void store ( )

overrideslot

undo_

void undo_ ( )

protectedslot

Undo the changes made in the GUI.

updateTree_

void updateTree_ ( )

protectedslot

Updates the tree by calling MetaDataBrowser::updateProteinHits()

Calls MetaDataBrowser::updateProteinHits().
Updates the tree depending of the protein significance threshold.
Only ProteinHits with a score superior or equal to the current threshold will be displayed.

Member Data Documentation

charges_

QLineEdit* charges_

protected

db_

QLineEdit* db_

protected

db_version_

QLineEdit* db_version_

protected

engine_

QLineEdit* engine_

protected

engine_version_

QLineEdit* engine_version_

protected

enzyme_

QLineEdit* enzyme_

protected

filter_threshold_

QLineEdit* filter_threshold_

protected

Threshold for filtering by score.

higher_better_

QComboBox* higher_better_

protected

identification_date_

QLineEdit* identification_date_

protected

identification_threshold_

QLineEdit* identification_threshold_

protected

identifier_

QLineEdit* identifier_

protected

mass_type_

QComboBox* mass_type_

protected

missed_cleavages_

QLineEdit* missed_cleavages_

protected

peak_tolerance_

QLineEdit* peak_tolerance_

protected

pidv_caller_

MetaDataBrowser* pidv_caller_

protected

Pointer to MetaDataBrowser.

precursor_tolerance_

QLineEdit* precursor_tolerance_

protected

score_type_

QLineEdit* score_type_

protected

taxonomy_

QLineEdit* taxonomy_

protected

tree_id_

int tree_id_

protected

The id of the item in the tree.