OpenMS  2.7.0
Public Member Functions | List of all members
TOPPASSplitterVertex Class Reference

A special vertex that allows to split a list of inputs. More...

#include <OpenMS/VISUAL/TOPPASSplitterVertex.h>

Inheritance diagram for TOPPASSplitterVertex:
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Collaboration diagram for TOPPASSplitterVertex:
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Public Member Functions

 TOPPASSplitterVertex ()=default
 Default constructor. More...
 
 TOPPASSplitterVertex (const TOPPASSplitterVertex &rhs)
 Copy constructor. More...
 
 ~TOPPASSplitterVertex () override=default
 Destructor. More...
 
TOPPASSplitterVertexoperator= (const TOPPASSplitterVertex &rhs)
 Assignment operator. More...
 
String getName () const override
 returns "SplitterVertex" More...
 
void run () override
 check if upstream nodes are finished and call downstream nodes More...
 
void paint (QPainter *painter, const QStyleOptionGraphicsItem *option, QWidget *widget) override
 
QRectF boundingRect () const override
 Returns the bounding rectangle of this item. More...
 
void markUnreachable () override
 Marks this node (and everything further downstream) as unreachable. Overridden behavior in mergers. More...
 
- Public Member Functions inherited from TOPPASVertex
 TOPPASVertex ()
 Default Constructor. More...
 
 TOPPASVertex (const TOPPASVertex &rhs)
 Copy constructor. More...
 
 ~TOPPASVertex () override=default
 Destructor. More...
 
TOPPASVertexoperator= (const TOPPASVertex &rhs)
 Assignment operator. More...
 
void paint (QPainter *painter, const QStyleOptionGraphicsItem *, QWidget *, bool round_shape=true)
 base paint method for all derived classes. should be called first in child-class paint More...
 
bool buildRoundPackages (RoundPackages &pkg, String &error_msg)
 
bool isUpstreamFinished () const
 check if all upstream nodes are ready to go ( 'finished_' is true) More...
 
QPainterPath shape () const final
 Returns a more precise shape. More...
 
ConstEdgeIterator outEdgesBegin () const
 Returns begin() iterator of outgoing edges. More...
 
ConstEdgeIterator outEdgesEnd () const
 Returns end() iterator of outgoing edges. More...
 
ConstEdgeIterator inEdgesBegin () const
 Returns begin() iterator of incoming edges. More...
 
ConstEdgeIterator inEdgesEnd () const
 Returns end() iterator of incoming edges. More...
 
Size incomingEdgesCount ()
 Returns the number of incoming edges. More...
 
Size outgoingEdgesCount ()
 Returns the number of outgoing edges. More...
 
void addInEdge (TOPPASEdge *edge)
 Adds an incoming edge. More...
 
void addOutEdge (TOPPASEdge *edge)
 Adds an outgoing edge. More...
 
void removeInEdge (TOPPASEdge *edge)
 Removes an incoming edge. More...
 
void removeOutEdge (TOPPASEdge *edge)
 Removes an outgoing edge. More...
 
DFS_COLOR getDFSColor ()
 Returns the DFS color of this node. More...
 
void setDFSColor (DFS_COLOR color)
 Sets the DFS color of this node. More...
 
TOPPASVertex::SUBSTREESTATUS getSubtreeStatus () const
 Checks if all tools in the subtree below this node are finished. More...
 
bool isTopoSortMarked ()
 Returns whether the vertex has been marked already (during topological sort) More...
 
void setTopoSortMarked (bool b)
 (Un)marks the vertex (during topological sort) More...
 
UInt getTopoNr ()
 Returns the topological sort number. More...
 
virtual void setTopoNr (UInt nr)
 Sets the topological sort number (overridden in tool and output vertices) More...
 
virtual void reset (bool reset_all_files=false)
 
bool isReachable ()
 Returns whether this node is reachable. More...
 
bool isFinished () const
 Returns whether this node has already been processed during the current pipeline execution. More...
 
virtual bool invertRecylingMode ()
 invert status of recycling More...
 
bool isRecyclingEnabled () const
 get status of recycling More...
 
void setRecycling (const bool is_enabled)
 set status of recycling More...
 
QStringList getFileNames (int param_index, int round) const
 gets filenames for a certain output parameter (from this vertex), for a certain TOPPAS round More...
 
QStringList getFileNames () const
 get all output files for all parameters for all rounds More...
 
const RoundPackagesgetOutputFiles () const
 
bool allInputsReady ()
 check if all upstream nodes are finished More...
 

Protected Member Functions

reimplemented Qt events
void mouseDoubleClickEvent (QGraphicsSceneMouseEvent *e) override
 
- Protected Member Functions inherited from TOPPASVertex
void mouseReleaseEvent (QGraphicsSceneMouseEvent *e) override
 
void mousePressEvent (QGraphicsSceneMouseEvent *e) override
 
void mouseDoubleClickEvent (QGraphicsSceneMouseEvent *e) override
 
void mouseMoveEvent (QGraphicsSceneMouseEvent *e) override
 
void contextMenuEvent (QGraphicsSceneContextMenuEvent *event) override
 
virtual void moveNewEdgeTo_ (const QPointF &pos)
 Moves the target pos of the edge which is just being created to pos. More...
 
String get3CharsNumber_ (UInt number) const
 Returns a three character string (i.e. 001 instead of 1) for the given number. More...
 
void debugOut_ (const String &) const
 Displays the debug output message, if TOPPAS_DEBUG is defined. More...
 

Additional Inherited Members

- Public Types inherited from TOPPASVertex
enum  DFS_COLOR { DFS_WHITE , DFS_GRAY , DFS_BLACK }
 The color of a vertex during depth-first search. More...
 
enum  SUBSTREESTATUS { TV_ALLFINISHED , TV_UNFINISHED , TV_UNFINISHED_INBRANCH }
 The color of a vertex during depth-first search. More...
 
typedef QList< TOPPASEdge * > EdgeContainer
 The container for in/out edges. More...
 
typedef EdgeContainer::iterator EdgeIterator
 A mutable iterator for in/out edges. More...
 
typedef EdgeContainer::const_iterator ConstEdgeIterator
 A const iterator for in/out edges. More...
 
typedef std::map< Int, VertexRoundPackageRoundPackage
 
typedef RoundPackage::const_iterator RoundPackageConstIt
 
typedef RoundPackage::iterator RoundPackageIt
 
typedef std::vector< RoundPackageRoundPackages
 all information a node needs to process all rounds More...
 
- Public Slots inherited from TOPPASVertex
virtual void inEdgeHasChanged ()
 Called by an incoming edge when it has changed. More...
 
virtual void outEdgeHasChanged ()
 Called by an outgoing edge when it has changed. More...
 
- Signals inherited from TOPPASVertex
void clicked ()
 Emitted when this item is clicked. More...
 
void released ()
 Emitted when this item is released. More...
 
void hoveringEdgePosChanged (const QPointF &new_pos)
 Emitted when the position of the hovering edge changes. More...
 
void newHoveringEdge (const QPointF &pos)
 Emitted when a new out edge is supposed to be created. More...
 
void finishHoveringEdge ()
 Emitted when the mouse is released after having dragged a new edge somewhere. More...
 
void somethingHasChanged ()
 Emitted when something has changed. More...
 
void itemDragged (qreal dx, qreal dy)
 Emitted when the item is dragged. More...
 
void parameterChanged (const bool invalidates_running_pipeline)
 
- Protected Attributes inherited from TOPPASVertex
EdgeContainer in_edges_
 The list of incoming edges. More...
 
EdgeContainer out_edges_
 The list of outgoing edges. More...
 
bool edge_being_created_ {false}
 Indicates whether a new out edge is currently being created. More...
 
QColor pen_color_ {Qt::black}
 The color of the pen. More...
 
QColor brush_color_ { Qt::lightGray}
 The color of the brush. More...
 
DFS_COLOR dfs_color_ {DFS_WHITE}
 The DFS color of this node. More...
 
bool topo_sort_marked_ {false}
 "marked" flag for topological sort More...
 
UInt topo_nr_
 The number in a topological sort of the entire graph. More...
 
RoundPackages output_files_
 Stores the current output file names for each output parameter. More...
 
int round_total_ {-1}
 number of rounds this node will do ('Merge All' nodes will pass everything, thus do only one round) More...
 
int round_counter_ {0}
 currently finished number of rounds (TODO: do we need that?) More...
 
bool finished_ {false}
 Stores whether this node has already been processed during the current pipeline execution. More...
 
bool reachable_ {true}
 Indicates whether this node is reachable (i.e. there is an input node somewhere further upstream) More...
 
bool allow_output_recycling_ {false}
 shall subsequent tools be allowed to recycle the output of this node to match the number of rounds imposed by other parent nodes? More...
 

Detailed Description

A special vertex that allows to split a list of inputs.

Tools that produce lists of output files (several files in each processing round, e.g. map alignment tools) cannot directly provide input for tools that only take a single input file in TOPPAS. This "Splitter" node provides the necessary glue, by splitting a list of output files into several rounds of single input files.

See the Collector node for the opposite operation.

Constructor & Destructor Documentation

◆ TOPPASSplitterVertex() [1/2]

TOPPASSplitterVertex ( )
default

Default constructor.

◆ TOPPASSplitterVertex() [2/2]

Copy constructor.

◆ ~TOPPASSplitterVertex()

~TOPPASSplitterVertex ( )
overridedefault

Destructor.

Member Function Documentation

◆ boundingRect()

QRectF boundingRect ( ) const
overridevirtual

Returns the bounding rectangle of this item.

Implements TOPPASVertex.

◆ getName()

String getName ( ) const
overridevirtual

returns "SplitterVertex"

Implements TOPPASVertex.

◆ markUnreachable()

void markUnreachable ( )
overridevirtual

Marks this node (and everything further downstream) as unreachable. Overridden behavior in mergers.

Reimplemented from TOPPASVertex.

◆ mouseDoubleClickEvent()

void mouseDoubleClickEvent ( QGraphicsSceneMouseEvent *  e)
overrideprotected

◆ operator=()

TOPPASSplitterVertex& operator= ( const TOPPASSplitterVertex rhs)

Assignment operator.

◆ paint()

void paint ( QPainter *  painter,
const QStyleOptionGraphicsItem *  option,
QWidget widget 
)
override

◆ run()

void run ( )
overridevirtual

check if upstream nodes are finished and call downstream nodes

Reimplemented from TOPPASVertex.