WindowMower augments the highest peaks in a sliding or jumping window. More...

#include <OpenMS/FILTERING/TRANSFORMERS/WindowMower.h>

Inheritance diagram for WindowMower:

Collaboration diagram for WindowMower:

Public Member Functions
	WindowMower ()
	default constructor More...

	~WindowMower () override
	destructor More...

	WindowMower (const WindowMower &source)
	copy constructor More...

WindowMower &	operator= (const WindowMower &source)
	assignment operator More...

template<typename SpectrumType >
void	filterPeakSpectrumForTopNInSlidingWindow (SpectrumType &spectrum)
	sliding window version (slower) More...

void	filterPeakSpectrum (PeakSpectrum &spectrum)

void	filterPeakMap (PeakMap &exp)

template<typename SpectrumType >
void	filterPeakSpectrumForTopNInJumpingWindow (SpectrumType &spectrum)

Public Member Functions inherited from DefaultParamHandler
	DefaultParamHandler (const String &name)
	Constructor with name that is displayed in error messages. More...

	DefaultParamHandler (const DefaultParamHandler &rhs)
	Copy constructor. More...

virtual	~DefaultParamHandler ()
	Destructor. More...

virtual DefaultParamHandler &	operator= (const DefaultParamHandler &rhs)
	Assignment operator. More...

virtual bool	operator== (const DefaultParamHandler &rhs) const
	Equality operator. More...

void	setParameters (const Param &param)
	Sets the parameters. More...

const Param &	getParameters () const
	Non-mutable access to the parameters. More...

const Param &	getDefaults () const
	Non-mutable access to the default parameters. More...

const String &	getName () const
	Non-mutable access to the name. More...

void	setName (const String &name)
	Mutable access to the name. More...

const std::vector< String > &	getSubsections () const
	Non-mutable access to the registered subsections. More...

Private Attributes
double	windowsize_

UInt	peakcount_

Additional Inherited Members
Static Public Member Functions inherited from DefaultParamHandler
static void	writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")
	Writes all parameters to meta values. More...

Protected Member Functions inherited from DefaultParamHandler
virtual void	updateMembers_ ()
	This method is used to update extra member variables at the end of the setParameters() method. More...

void	defaultsToParam_ ()
	Updates the parameters after the defaults have been set in the constructor. More...

Protected Attributes inherited from DefaultParamHandler
Param	param_
	Container for current parameters. More...

Param	defaults_
	Container for default parameters. This member should be filled in the constructor of derived classes! More...

std::vector< String >	subsections_
	Container for registered subsections. This member should be filled in the constructor of derived classes! More...

String	error_name_
	Name that is displayed in error messages during the parameter checking. More...

bool	check_defaults_
	If this member is set to false no checking if parameters in done;. More...

bool	warn_empty_defaults_
	If this member is set to false no warning is emitted when defaults are empty;. More...

Detailed Description

WindowMower augments the highest peaks in a sliding or jumping window.

Parameters of this class are:

Name	Type	Default	Restrictions	Description
windowsize	float	50.0		The size of the sliding window along the m/z axis.
peakcount	int	2		The number of peaks that should be kept.
movetype	string	slide	slide, jump	Whether sliding window (one peak steps) or jumping window (window size steps) should be used.

Note:

If a section name is documented, the documentation is displayed as tooltip.
Advanced parameter names are italic.

Constructor & Destructor Documentation

◆ WindowMower() [1/2]

WindowMower ( )

default constructor

◆ ~WindowMower()

~WindowMower ( )

override

destructor

◆ WindowMower() [2/2]

WindowMower ( const WindowMower & source )

copy constructor

Member Function Documentation

◆ filterPeakMap()

void filterPeakMap ( PeakMap & exp )

◆ filterPeakSpectrum()

void filterPeakSpectrum ( PeakSpectrum & spectrum )

Referenced by NucleicAcidSearchEngine::preprocessSpectra_().

◆ filterPeakSpectrumForTopNInJumpingWindow()

void filterPeakSpectrumForTopNInJumpingWindow ( SpectrumType & spectrum )

inline

References MSSpectrum::clear(), seqan::find(), OpenMS::reverseComparator(), OpenMS::Math::round(), MSSpectrum::select(), and MSSpectrum::sortByPosition().

◆ filterPeakSpectrumForTopNInSlidingWindow()

void filterPeakSpectrumForTopNInSlidingWindow ( SpectrumType & spectrum )

inline

sliding window version (slower)

References MSSpectrum::select(), MSSpectrum::sortByIntensity(), and MSSpectrum::sortByPosition().

◆ operator=()

WindowMower& operator= ( const WindowMower & source )

assignment operator

Member Data Documentation

◆ peakcount_

UInt peakcount_

private

◆ windowsize_

double windowsize_