OpenMS  2.7.0
Classes | Functions
OpenMS::ims Namespace Reference

Classes

class  IMSAlphabet
 Holds an indexed list of bio-chemical elements. More...
 
class  IMSAlphabetParser
 An abstract templatized parser to load the data that is used to initialize Alphabet objects. More...
 
class  IMSAlphabetTextParser
 Implements abstract AlphabetParser to read data from the plain text format. More...
 
class  IMSElement
 Represents a chemical atom with name and isotope distribution. More...
 
class  IMSIsotopeDistribution
 Represents a distribution of isotopes restricted to the first K elements. More...
 
class  IntegerMassDecomposer
 Implements MassDecomposer interface using algorithm and data structures described in paper "Efficient Mass Decomposition" S. Böcker, Z. Lipták, ACM SAC-BIO, 2004 doi:10.1145/1066677.1066715. More...
 
class  MassDecomposer
 An interface to handle decomposing of integer values/masses over a set of integer weights (alphabet). More...
 
class  RealMassDecomposer
 Handles decomposing of non-integer values/masses over a set of non-integer weights with an error allowed. More...
 
class  Weights
 Represents a set of weights (double values and scaled with a certain precision their integer counterparts) with a quick access. More...
 

Functions

std::ostream & operator<< (std::ostream &os, const IMSAlphabet &alphabet)
 
std::ostream & operator<< (std::ostream &os, const IMSElement &element)
 
std::ostream & operator<< (std::ostream &os, const IMSIsotopeDistribution &distribution)
 
std::ostream & operator<< (std::ostream &os, const Weights &weights)
 

Function Documentation

◆ operator<<() [1/4]

std::ostream& OpenMS::ims::operator<< ( std::ostream &  os,
const IMSAlphabet alphabet 
)

Prints alphabet to the stream os.

Parameters
osOutput stream to which alphabet is written
alphabetAlphabet to be written.

◆ operator<<() [2/4]

std::ostream& OpenMS::ims::operator<< ( std::ostream &  os,
const IMSElement element 
)

Prints element to the stream os.

Parameters
osOutput stream to which element is printed out.
elementElement to be printed out.

◆ operator<<() [3/4]

std::ostream& OpenMS::ims::operator<< ( std::ostream &  os,
const IMSIsotopeDistribution distribution 
)

Prints isotope distribution to the stream os.

Parameters
osOutput stream to which distribution is printed out.
distributionDistribution to be printed out.

◆ operator<<() [4/4]

std::ostream& OpenMS::ims::operator<< ( std::ostream &  os,
const Weights weights 
)

Prints weights to the stream os.

Parameters
osOutput stream to which weights are written.
weightsWeights to be written.