FASTAFile::FASTAEntry Struct Reference

FASTA entry type (identifier, description and sequence) The first String corresponds to the identifier that is written after the > in the FASTA file. The part after the first whitespace is stored in description and the text from the next line until the next > (exclusive) is stored in sequence. More...

#include <OpenMS/FORMAT/FASTAFile.h>

Collaboration diagram for FASTAFile::FASTAEntry:

Public Member Functions
	FASTAEntry ()=default
	FASTAEntry (const String &id, const String &desc, const String &seq)
	FASTAEntry (const FASTAEntry &rhs)=default
	FASTAEntry (FASTAEntry &&rhs) noexcept
FASTAEntry &	operator= (const FASTAEntry &rhs)=default
bool	operator== (const FASTAEntry &rhs) const
bool	headerMatches (const FASTAEntry &rhs) const
bool	sequenceMatches (const FASTAEntry &rhs) const

Public Attributes
String	identifier
String	description
String	sequence

Detailed Description

FASTA entry type (identifier, description and sequence) The first String corresponds to the identifier that is written after the > in the FASTA file. The part after the first whitespace is stored in description and the text from the next line until the next > (exclusive) is stored in sequence.

Constructor & Destructor Documentation

FASTAEntry() [1/4]

FASTAEntry ( )

default

FASTAEntry() [2/4]

FASTAEntry ( const String &  id, const String &  desc, const String &  seq  )

inline

FASTAEntry() [3/4]

FASTAEntry ( const FASTAEntry &  rhs )

default

FASTAEntry() [4/4]

FASTAEntry ( FASTAEntry &&  rhs )

inlinenoexcept

Member Function Documentation

headerMatches()

bool headerMatches ( const FASTAEntry &  rhs ) const

inline

References FASTAFile::FASTAEntry::description, and FASTAFile::FASTAEntry::identifier.

operator=()

FASTAEntry& operator= ( const FASTAEntry &  rhs )

default

operator==()

bool operator== ( const FASTAEntry &  rhs ) const

inline

References FASTAFile::FASTAEntry::description, FASTAFile::FASTAEntry::identifier, and FASTAFile::FASTAEntry::sequence.

sequenceMatches()

bool sequenceMatches ( const FASTAEntry &  rhs ) const

inline

References FASTAFile::FASTAEntry::sequence.

Member Data Documentation

description

String description

Referenced by FASTAFile::FASTAEntry::headerMatches(), FASTAFile::FASTAEntry::operator==(), and PeptideIndexing::run().

identifier

String identifier

Referenced by IDFilter::GetMatchingItems< HitType, Entry >::getKey(), FASTAFile::FASTAEntry::headerMatches(), and FASTAFile::FASTAEntry::operator==().

sequence

String sequence

Referenced by FASTAFile::FASTAEntry::operator==(), PeptideIndexing::run(), and FASTAFile::FASTAEntry::sequenceMatches().