OpenMS  2.8.0
SwathTabWidget.h
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31 // $Maintainer: Chris Bielow $
32 // $Authors: Chris Bielow $
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34 
35 #pragma once
36 
37 // OpenMS_GUI config
38 #include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
39 
46 
47 #include <QTabWidget> // our base class
48 
49 #include <vector>
50 #include <utility> // for std::pair
51 
52 namespace Ui
53 {
54  class SwathTabWidget;
55 }
56 
57 namespace OpenMS
58 {
59  class InputFile;
60  class OutputDirectory;
61  class ParamEditor;
62 
63 
64  namespace Internal
65  {
66  class SwathTabWidget;
67 
72  {
73  public:
75 
77  private:
81  };
82 
84  class OPENMS_GUI_DLLAPI SwathTabWidget : public QTabWidget
85  {
86  Q_OBJECT
87 
88  public:
89  friend class SwathGUILock;
90 
91  explicit SwathTabWidget(QWidget *parent = nullptr);
93 
95 
96  QStringList getPyProphetOutputFileNames() const;
97 
98  private slots:
102  void broadcastNewCWD_(const QString& new_cwd);
103 
104 
106 
108 
110 
111  private:
114  bool findPythonScript_(const String& path_to_python_exe, String& script_name);
115 
118 
121 
123  QString getCurrentOutDir_() const;
124 
127  std::vector<std::pair<String, bool>> getPyProphetInputFiles() const;
128 
131 
133 
134 
138  void writeLog_(const QString& text, const QColor& color = "#000000", bool new_section = false);
140  void writeLog_(const String& text, const QColor& color = "#000000", bool new_section = false);
141 
145 
146  Ui::SwathTabWidget *ui;
149 
152  };
153 
154  }
155 } // ns OpenMS
156 
157 // this is required to allow Ui_SwathTabWidget (auto UIC'd from .ui) to have a InputFile member
OpenMS::TableView TableView
Definition: SwathTabWidget.h:161
OpenMS::InputFile InputFile
Definition: SwathTabWidget.h:158
OpenMS::OutputDirectory OutputDirectory
Definition: SwathTabWidget.h:159
OpenMS::ParamEditor ParamEditor
Definition: SwathTabWidget.h:160
A wrapper around ExternalProcess to conveniently show a MessageBox when an error occurs.
Definition: ExternalProcessMBox.h:55
RAII class to disable the GUI and set a busy cursor and go back to the orignal state when this class ...
Definition: GUIHelpers.h:120
A simple widget with a line-edit and a browse button to choose filenames.
Definition: gui/include/OpenMS/VISUAL/InputFile.h:57
RAII class to switch to certain TabWidget, disable the GUI and go back to the orignal Tab when this c...
Definition: SwathTabWidget.h:72
SwathTabWidget * stw_
Definition: SwathTabWidget.h:78
SwathGUILock(SwathTabWidget *stw)
GUIHelpers::GUILock glock_
Definition: SwathTabWidget.h:80
QWidget * old_
Definition: SwathTabWidget.h:79
A multi-tabbed widget for the SwathWizard offering setting of parameters, input-file specification an...
Definition: SwathTabWidget.h:85
QStringList getPyProphetOutputFileNames() const
std::vector< std::pair< String, bool > > getPyProphetInputFiles() const
ExternalProcessMBox ep_
to run external programs and pipe their output into our log
Definition: SwathTabWidget.h:151
void writeLog_(const QString &text, const QColor &color="#000000", bool new_section=false)
fill osw_result_files_ according to the the currently specified input mzMLs
bool findPythonScript_(const String &path_to_python_exe, String &script_name)
void checkPyProphetInput_()
check if input to pyProphet is already present in the output directory of OSW
void updateWidgetsfromSwathParam_()
update Widgets given a param object
Param swath_param_wizard_
small selection of important parameters which the user can directly change in the Wizard
Definition: SwathTabWidget.h:148
void updateSwathParamFromWidgets_()
collect all parameters throughout the Wizard's controls and update 'swath_param_'
StringList getMzMLInputFiles() const
SwathTabWidget(QWidget *parent=nullptr)
StringList osw_result_files_
list of .osw files produced by OSW which are currently available
Definition: SwathTabWidget.h:150
QString getCurrentOutDir_() const
where to write OSW output and pyProphet output
Param swath_param_
the global Swath parameters which will be passed to OpenSwathWorkflow.exe, once updated with paramete...
Definition: SwathTabWidget.h:147
void writeLog_(const String &text, const QColor &color="#000000", bool new_section=false)
convenient overload for String
void broadcastNewCWD_(const QString &new_cwd)
update the current working directory for all file input fields
Ui::SwathTabWidget * ui
Definition: SwathTabWidget.h:146
A simple widget with a line-edit and a browse button to choose filenames.
Definition: OutputDirectory.h:57
A GUI for editing or viewing a Param object.
Definition: ParamEditor.h:180
Management and storage of parameters / INI files.
Definition: Param.h:70
A more convenient string class.
Definition: String.h:60
A better QTable for TOPPView, which supports exporting to TSV and conveniently adding data to cells a...
Definition: TableView.h:48
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Definition: SwathWizardBase.h:63