OpenMS  2.8.0
Classes | Public Member Functions | Public Attributes | List of all members
MRMFeatureQC Class Reference

The MRMFeatureQC is a class to handle the parameters and options for MRMFeatureFilter. More...

#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h>

Collaboration diagram for MRMFeatureQC:
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Classes

struct  ComponentGroupPairQCs
 Quality Controls (QCs) for multiple components (between or within component_groups) More...
 
struct  ComponentGroupQCs
 Quality Controls (QCs) within a component group. More...
 
struct  ComponentQCs
 Quality Controls (QCs) for individual components. More...
 

Public Member Functions

 MRMFeatureQC ()=default
 Constructor. More...
 
 ~MRMFeatureQC ()=default
 Destructor. More...
 

Public Attributes

std::vector< ComponentQCscomponent_qcs
 list of all component QCs More...
 
std::vector< ComponentGroupQCscomponent_group_qcs
 list of all component group QCs More...
 
std::vector< ComponentGroupPairQCscomponent_group_pair_qcs
 list of all component group pair QCs More...
 

Detailed Description

The MRMFeatureQC is a class to handle the parameters and options for MRMFeatureFilter.

The format is based loosely on the TraML format and can be stored and loaded to disk using MRMFeatureQCFile.

Quality control parameters are available on multiple levels:


Class Documentation

◆ OpenMS::MRMFeatureQC::ComponentGroupPairQCs

struct OpenMS::MRMFeatureQC::ComponentGroupPairQCs

Quality Controls (QCs) for multiple components (between or within component_groups)

This structure contains upper and lower bounds for parameters that involve two or more component groups. For example, a quality control that is based on a minimum retention time difference between two components would be suitable for this struct.

Collaboration diagram for MRMFeatureQC::ComponentGroupPairQCs:
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Class Members
String component_group_name name of the component
double resolution_l resolution lower bound
String resolution_pair_name name of the component to calculate the resolution or retention time
double resolution_u resolution upper bound
double rt_diff_l retention time lower bound
double rt_diff_u retention time upper bound

Constructor & Destructor Documentation

◆ MRMFeatureQC()

MRMFeatureQC ( )
default

Constructor.

◆ ~MRMFeatureQC()

~MRMFeatureQC ( )
default

Destructor.

Member Data Documentation

◆ component_group_pair_qcs

std::vector<ComponentGroupPairQCs> component_group_pair_qcs

list of all component group pair QCs

◆ component_group_qcs

std::vector<ComponentGroupQCs> component_group_qcs

list of all component group QCs

◆ component_qcs

std::vector<ComponentQCs> component_qcs

list of all component QCs