OpenMS  2.8.0
Public Slots | Public Member Functions | Protected Slots | Protected Attributes | List of all members
PeptideIdentificationVisualizer Class Reference

Class that displays all meta information for PeptideIdentification objects. More...

#include <OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h>

Inheritance diagram for PeptideIdentificationVisualizer:
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Collaboration diagram for PeptideIdentificationVisualizer:
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Public Slots

void store () override
 
- Public Slots inherited from BaseVisualizerGUI
virtual void store ()=0
 Saves the changes made in the GUI to the object. More...
 

Public Member Functions

 PeptideIdentificationVisualizer (bool editable=false, QWidget *parent=nullptr, MetaDataBrowser *caller=nullptr)
 Constructor. More...
 
void load (PeptideIdentification &s, int tree_item_id)
 Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter. More...
 
- Public Member Functions inherited from BaseVisualizerGUI
 BaseVisualizerGUI (bool editable=false, QWidget *parent=nullptr)
 Constructor. More...
 
bool isEditable () const
 Returns if the values are editable. More...
 
- Public Member Functions inherited from BaseVisualizer< PeptideIdentification >
void load (PeptideIdentification &o)
 Loads the object that is to be edited. More...
 
virtual ~BaseVisualizer ()
 

Protected Slots

void undo_ ()
 Undo the changes made in the GUI. More...
 
void updateTree_ ()
 Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int) More...
 

Protected Attributes

MetaDataBrowserpidv_caller_
 Pointer to MetaDataBrowser. More...
 
int tree_id_
 The id of the item in the tree. More...
 
Edit fields and buttons
QLineEditidentifier_
 
QLineEditscore_type_
 
QComboBox * higher_better_
 
QLineEditidentification_threshold_
 
QLineEditfilter_threshold_
 Threshold for filtering by score. More...
 
- Protected Attributes inherited from BaseVisualizerGUI
QPushButton * undo_button_
 Undo button. More...
 
QGridLayout * mainlayout_
 The main layout. More...
 
UInt row_
 Counter for the current grid row. More...
 
bool editable_
 Edit flag. More...
 
- Protected Attributes inherited from BaseVisualizer< PeptideIdentification >
PeptideIdentificationptr_
 Pointer to the object that is currently edited. More...
 
PeptideIdentification temp_
 Copy of current object used to restore the original values. More...
 

Additional Inherited Members

- Signals inherited from BaseVisualizerGUI
void sendStatus (std::string status)
 Sends a status message, if date is not in proper format. More...
 
- Protected Member Functions inherited from BaseVisualizerGUI
void addLabel_ (QString label)
 Adds a label to the grid layout. More...
 
void addLabel_ (QString label, UInt row)
 Adds a label to a certain row. More...
 
void addLineEdit_ (QLineEdit *&ptr, QString label)
 Adds a line edit field with label to the grid layout. More...
 
void addIntLineEdit_ (QLineEdit *&ptr, QString label)
 Adds a line edit field to the grid layout including a int validator. More...
 
void addDoubleLineEdit_ (QLineEdit *&ptr, QString label)
 Adds a line edit field to the grid layout including a double validator. More...
 
void addLineEditButton_ (QString label, QLineEdit *&ptr1, QPushButton *&ptr2, QString buttonlabel)
 Adds a line edit field with label and button to the next free position in the grid. More...
 
void addListView_ (QListWidget *&ptr, QString label)
 Adds a list edit field to the grid layout. More...
 
void addTextEdit_ (QTextEdit *&ptr, QString label)
 Adds a text edit field to the grid layout. More...
 
void addComboBox_ (QComboBox *&ptr, QString label)
 Adds a drop-down field to the grid layout. More...
 
void addBooleanComboBox_ (QComboBox *&ptr, QString label)
 Adds a boolean drop-down field to the grid layout ( 'true'=1, 'false'=0 ). More...
 
void fillComboBox_ (QComboBox *&ptr, const std::string *items, int item_count)
 Fills a combo box with string items (the number of strings is determined by item_count). More...
 
void addVSpacer_ ()
 Adds vertical spacer. More...
 
void addButton_ (QPushButton *&ptr, QString label)
 Adds a button to the next free position in the grid. More...
 
void add2Buttons_ (QPushButton *&ptr1, QString label1, QPushButton *&ptr2, QString label2)
 Adds two buttons in a row. More...
 
void addSeparator_ ()
 Adds a horizontal line as a separator. More...
 
void finishAdding_ ()
 Adds buttons common to all visualizers. More...
 
- Protected Member Functions inherited from BaseVisualizer< PeptideIdentification >
virtual void update_ ()
 Updates the GUI from the temp_ variable. More...
 

Detailed Description

Class that displays all meta information for PeptideIdentification objects.

This class provides all functionality to view the meta information of an object of type PeptideIdentification.

Constructor & Destructor Documentation

◆ PeptideIdentificationVisualizer()

PeptideIdentificationVisualizer ( bool  editable = false,
QWidget parent = nullptr,
MetaDataBrowser caller = nullptr 
)

Constructor.

Member Function Documentation

◆ load()

void load ( PeptideIdentification s,
int  tree_item_id 
)

Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.

◆ store

void store ( )
overrideslot

◆ undo_

void undo_ ( )
protectedslot

Undo the changes made in the GUI.

◆ updateTree_

void updateTree_ ( )
protectedslot

Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int)

Calls MetaDataBrowser::updatePeptideHits(PeptideIdentification, int).
Updates the tree depending of the protein significance threshold.
Only ProteinHits with a score superior or equal to the current threshold will be displayed.

Member Data Documentation

◆ filter_threshold_

QLineEdit* filter_threshold_
protected

Threshold for filtering by score.

◆ higher_better_

QComboBox* higher_better_
protected

◆ identification_threshold_

QLineEdit* identification_threshold_
protected

◆ identifier_

QLineEdit* identifier_
protected

◆ pidv_caller_

MetaDataBrowser* pidv_caller_
protected

Pointer to MetaDataBrowser.

◆ score_type_

QLineEdit* score_type_
protected

◆ tree_id_

int tree_id_
protected

The id of the item in the tree.