OpenMS  2.8.0
Public Types | Public Member Functions | Public Attributes | List of all members
ProteinIdentification::ProteinGroup Class Reference

Bundles multiple (e.g. indistinguishable) proteins in a group. More...

#include <OpenMS/METADATA/ProteinIdentification.h>

Collaboration diagram for ProteinIdentification::ProteinGroup:
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Public Types

typedef OpenMS::DataArrays::FloatDataArray FloatDataArray
 Float data array vector type. More...
 
typedef std::vector< FloatDataArrayFloatDataArrays
 
typedef OpenMS::DataArrays::StringDataArray StringDataArray
 String data array vector type. More...
 
typedef std::vector< StringDataArrayStringDataArrays
 
typedef OpenMS::DataArrays::IntegerDataArray IntegerDataArray
 Integer data array vector type. More...
 
typedef std::vector< IntegerDataArrayIntegerDataArrays
 

Public Member Functions

 ProteinGroup ()
 
bool operator== (const ProteinGroup &rhs) const
 Equality operator. More...
 
bool operator< (const ProteinGroup &rhs) const
 

Public Attributes

double probability
 Probability of this group. More...
 
std::vector< Stringaccessions
 Accessions of (indistinguishable) proteins that belong to the same group. More...
 

data array methods

Float data arrays

These methods are used to annotate protein group meta information.

These statements should help you chose which approach to use

  • Access to meta info arrays is slower than to a member variable
  • Access to meta info arrays is faster than to a MetaInfoInterface
  • Meta info arrays are stored when using mzML format for storing
FloatDataArrays float_data_arrays_
 Float data arrays. More...
 
StringDataArrays string_data_arrays_
 String data arrays. More...
 
IntegerDataArrays integer_data_arrays_
 Integer data arrays. More...
 
const FloatDataArraysgetFloatDataArrays () const
 Returns a const reference to the float meta data arrays. More...
 
FloatDataArraysgetFloatDataArrays ()
 Returns a mutable reference to the float meta data arrays. More...
 
void setFloatDataArrays (const FloatDataArrays &fda)
 Sets the float meta data arrays. More...
 
const StringDataArraysgetStringDataArrays () const
 Returns a const reference to the string meta data arrays. More...
 
StringDataArraysgetStringDataArrays ()
 Returns a mutable reference to the string meta data arrays. More...
 
void setStringDataArrays (const StringDataArrays &sda)
 Sets the string meta data arrays. More...
 
const IntegerDataArraysgetIntegerDataArrays () const
 Returns a const reference to the integer meta data arrays. More...
 
IntegerDataArraysgetIntegerDataArrays ()
 Returns a mutable reference to the integer meta data arrays. More...
 
void setIntegerDataArrays (const IntegerDataArrays &ida)
 Sets the integer meta data arrays. More...
 
IntegerDataArraygetIntegerDataArrayByName (String name)
 Returns a mutable reference to the first integer meta data array with the given name. More...
 
StringDataArraygetStringDataArrayByName (String name)
 Returns a mutable reference to the first string meta data array with the given name. More...
 
FloatDataArraygetFloatDataArrayByName (String name)
 Returns a mutable reference to the first float meta data array with the given name. More...
 
const IntegerDataArraygetIntegerDataArrayByName (String name) const
 Returns a const reference to the first integer meta data array with the given name. More...
 
const StringDataArraygetStringDataArrayByName (String name) const
 Returns a const reference to the first string meta data array with the given name. More...
 
const FloatDataArraygetFloatDataArrayByName (String name) const
 Returns a const reference to the first float meta data array with the given name. More...
 

Detailed Description

Bundles multiple (e.g. indistinguishable) proteins in a group.

Member Typedef Documentation

◆ FloatDataArray

Float data array vector type.

◆ FloatDataArrays

typedef std::vector<FloatDataArray> FloatDataArrays

◆ IntegerDataArray

Integer data array vector type.

◆ IntegerDataArrays

typedef std::vector<IntegerDataArray> IntegerDataArrays

◆ StringDataArray

String data array vector type.

◆ StringDataArrays

typedef std::vector<StringDataArray> StringDataArrays

Constructor & Destructor Documentation

◆ ProteinGroup()

Member Function Documentation

◆ getFloatDataArrayByName() [1/2]

FloatDataArray& getFloatDataArrayByName ( String  name)
inline

Returns a mutable reference to the first float meta data array with the given name.

◆ getFloatDataArrayByName() [2/2]

const FloatDataArray& getFloatDataArrayByName ( String  name) const
inline

Returns a const reference to the first float meta data array with the given name.

◆ getFloatDataArrays() [1/2]

FloatDataArrays& getFloatDataArrays ( )
inline

Returns a mutable reference to the float meta data arrays.

◆ getFloatDataArrays() [2/2]

const FloatDataArrays& getFloatDataArrays ( ) const

Returns a const reference to the float meta data arrays.

◆ getIntegerDataArrayByName() [1/2]

IntegerDataArray& getIntegerDataArrayByName ( String  name)
inline

Returns a mutable reference to the first integer meta data array with the given name.

◆ getIntegerDataArrayByName() [2/2]

const IntegerDataArray& getIntegerDataArrayByName ( String  name) const
inline

Returns a const reference to the first integer meta data array with the given name.

◆ getIntegerDataArrays() [1/2]

IntegerDataArrays& getIntegerDataArrays ( )

Returns a mutable reference to the integer meta data arrays.

◆ getIntegerDataArrays() [2/2]

const IntegerDataArrays& getIntegerDataArrays ( ) const

Returns a const reference to the integer meta data arrays.

◆ getStringDataArrayByName() [1/2]

StringDataArray& getStringDataArrayByName ( String  name)
inline

Returns a mutable reference to the first string meta data array with the given name.

◆ getStringDataArrayByName() [2/2]

const StringDataArray& getStringDataArrayByName ( String  name) const
inline

Returns a const reference to the first string meta data array with the given name.

◆ getStringDataArrays() [1/2]

StringDataArrays& getStringDataArrays ( )

Returns a mutable reference to the string meta data arrays.

◆ getStringDataArrays() [2/2]

const StringDataArrays& getStringDataArrays ( ) const

Returns a const reference to the string meta data arrays.

◆ operator<()

bool operator< ( const ProteinGroup rhs) const

◆ operator==()

bool operator== ( const ProteinGroup rhs) const

Equality operator.

◆ setFloatDataArrays()

void setFloatDataArrays ( const FloatDataArrays fda)

Sets the float meta data arrays.

◆ setIntegerDataArrays()

void setIntegerDataArrays ( const IntegerDataArrays ida)

Sets the integer meta data arrays.

◆ setStringDataArrays()

void setStringDataArrays ( const StringDataArrays sda)

Sets the string meta data arrays.

Member Data Documentation

◆ accessions

std::vector<String> accessions

Accessions of (indistinguishable) proteins that belong to the same group.

◆ float_data_arrays_

FloatDataArrays float_data_arrays_
private

Float data arrays.

◆ integer_data_arrays_

IntegerDataArrays integer_data_arrays_
private

Integer data arrays.

◆ probability

double probability

Probability of this group.

◆ string_data_arrays_

StringDataArrays string_data_arrays_
private

String data arrays.