OpenMS  2.8.0
Classes | Functions
OpenMS::TargetedExperimentHelper Namespace Reference

This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget). More...

Classes

struct  Configuration
 
struct  CV
 
struct  Protein
 
class  RetentionTime
 This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More...
 
class  PeptideCompound
 Base class to represent either a peptide or a compound. More...
 
class  Compound
 Represents a compound (small molecule) More...
 
class  Peptide
 Represents a peptide (amino acid sequence) More...
 
struct  Contact
 
struct  Publication
 
struct  Instrument
 
struct  Prediction
 
struct  Interpretation
 Product ion interpretation. More...
 
struct  TraMLProduct
 Represents a product ion. More...
 

Functions

OpenMS::AASequence getAASequence (const Peptide &peptide)
 helper function that converts a Peptide object to a AASequence object More...
 
void setModification (int location, int max_size, String modification, OpenMS::AASequence &aas)
 helper function that sets a modification on a AASequence object More...
 

Detailed Description

This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget).

Function Documentation

◆ getAASequence()

OpenMS::AASequence OpenMS::TargetedExperimentHelper::getAASequence ( const Peptide peptide)

helper function that converts a Peptide object to a AASequence object

◆ setModification()

void OpenMS::TargetedExperimentHelper::setModification ( int  location,
int  max_size,
String  modification,
OpenMS::AASequence aas 
)

helper function that sets a modification on a AASequence object