OpenMS
DeNovoAlgorithm.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Sandro Andreotti, Andreas Bertsch$
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34 
35 #pragma once
36 
39 
40 namespace OpenMS
41 {
42  class PeptideIdentification;
43 
51  class OPENMS_DLLAPI DeNovoAlgorithm :
52  public DefaultParamHandler
53  {
54 public:
55 
61 
63  ~DeNovoAlgorithm() override;
64 
68 
71 
72  virtual void generateCandidates(std::vector<PeptideIdentification> & candidates, const std::vector<std::vector<DeNovoIonScoring::IonScore> > & ion_scores, const PeakMap & exp) = 0;
73 
74  virtual void generateCandidates(PeptideIdentification & candidates, std::vector<DeNovoIonScoring::IonScore> & ion_scores, const PeakSpectrum & spec) = 0;
75 
76  };
77 
78 } // namespace OpenMS
79 
Base class for ion scoring implementation for de novo algorithms.
Definition: DeNovoAlgorithm.h:53
virtual void generateCandidates(std::vector< PeptideIdentification > &candidates, const std::vector< std::vector< DeNovoIonScoring::IonScore > > &ion_scores, const PeakMap &exp)=0
DeNovoAlgorithm(const DeNovoAlgorithm &rhs)
copy constructor
DeNovoAlgorithm()
default constructor
DeNovoAlgorithm & operator=(const DeNovoAlgorithm &rhs)
assignment operator
virtual void generateCandidates(PeptideIdentification &candidates, std::vector< DeNovoIonScoring::IonScore > &ion_scores, const PeakSpectrum &spec)=0
~DeNovoAlgorithm() override
destructor
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
In-Memory representation of a mass spectrometry run.
Definition: MSExperiment.h:72
The representation of a 1D spectrum.
Definition: MSSpectrum.h:70
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:65
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:48