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OpenMS
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Base class for ion scoring implementation for de novo algorithms. More...
#include <OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h>
Public Member Functions | |
Constructors and destructors | |
| DeNovoAlgorithm () | |
| default constructor More... | |
| ~DeNovoAlgorithm () override | |
| destructor More... | |
| DeNovoAlgorithm (const DeNovoAlgorithm &rhs) | |
| copy constructor More... | |
| DeNovoAlgorithm & | operator= (const DeNovoAlgorithm &rhs) |
| assignment operator More... | |
| virtual void | generateCandidates (std::vector< PeptideIdentification > &candidates, const std::vector< std::vector< DeNovoIonScoring::IonScore > > &ion_scores, const PeakMap &exp)=0 |
| virtual void | generateCandidates (PeptideIdentification &candidates, std::vector< DeNovoIonScoring::IonScore > &ion_scores, const PeakSpectrum &spec)=0 |
 Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages. More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor. More... | |
| virtual | ~DefaultParamHandler () |
| Destructor. More... | |
| DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
| Assignment operator. More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const |
| Equality operator. More... | |
| void | setParameters (const Param ¶m) |
| Sets the parameters. More... | |
| const Param & | getParameters () const |
| Non-mutable access to the parameters. More... | |
| const Param & | getDefaults () const |
| Non-mutable access to the default parameters. More... | |
| const String & | getName () const |
| Non-mutable access to the name. More... | |
| void | setName (const String &name) |
| Mutable access to the name. More... | |
| const std::vector< String > & | getSubsections () const |
| Non-mutable access to the registered subsections. More... | |
Additional Inherited Members | |
| Static Public Member Functions inherited from DefaultParamHandler | |
| static void | writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") |
| Writes all parameters to meta values. More... | |
| Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () |
| This method is used to update extra member variables at the end of the setParameters() method. More... | |
| void | defaultsToParam_ () |
| Updates the parameters after the defaults have been set in the constructor. More... | |
| Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ |
| Container for current parameters. More... | |
| Param | defaults_ |
| Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
| std::vector< String > | subsections_ |
| Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
| String | error_name_ |
| Name that is displayed in error messages during the parameter checking. More... | |
| bool | check_defaults_ |
| If this member is set to false no checking if parameters in done;. More... | |
| bool | warn_empty_defaults_ |
| If this member is set to false no warning is emitted when defaults are empty;. More... | |
Base class for ion scoring implementation for de novo algorithms.
| DeNovoAlgorithm | ( | ) |
default constructor
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override |
destructor
| DeNovoAlgorithm | ( | const DeNovoAlgorithm & | rhs | ) |
copy constructor
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pure virtual |
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pure virtual |
| DeNovoAlgorithm& operator= | ( | const DeNovoAlgorithm & | rhs | ) |
assignment operator
1.9.1 
