A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z | _

A: AA (OpenMS); AAIndex (OpenMS); AASequence (OpenMS); OPXLDataStructs::AASeqWithMass (OpenMS); OPXLDataStructs::AASeqWithMassComparator (OpenMS); FuzzyStringComparator::AbortComparison (OpenMS); AbsoluteQuantitation (OpenMS); AbsoluteQuantitationMethod (OpenMS); AbsoluteQuantitationMethodFile (OpenMS); AbsoluteQuantitationStandards (OpenMS); AbsoluteQuantitationStandardsFile (OpenMS); SiriusMSFile::AccessionInfo (OpenMS); AccurateMassSearchEngine (OpenMS); AccurateMassSearchResult (OpenMS); ACNode (OpenMS); Acquisition (OpenMS); AcquisitionInfo (OpenMS); AcquisitionInfoVisualizer (OpenMS); AcquisitionVisualizer (OpenMS); AcqusHandler (OpenMS::Internal); ACSpawn (OpenMS); TOPPViewMenu::ActionRequirement_ (OpenMS); ACTrie (OpenMS); ACTrieState (OpenMS); Adduct (OpenMS); AdductCompare (OpenMS::IdentificationDataInternal); AdductInfo (OpenMS); MSstatsFile::AggregatedConsensusInfo (OpenMS); TriqlerFile::AggregatedConsensusInfo (OpenMS); always_true (KDTree); PepXMLFile::AminoAcidModification (OpenMS); MzIdentMLDOMHandler::AnalysisSoftware (OpenMS::Internal); MSQuantifications::AnalysisSummary (OpenMS); NucleicAcidSearchEngine::AnnotatedHit; SimpleSearchEngineAlgorithm::AnnotatedHit_ (OpenMS); Annotation1DCaret (OpenMS); Annotation1DDistanceItem (OpenMS); Annotation1DItem (OpenMS); Annotation1DPeakItem (OpenMS); Annotation1DTextItem (OpenMS); Annotation1DVerticalLineItem (OpenMS); Annotations1DContainer (OpenMS); AnnotationStatistics (OpenMS); MassTraceDetection::Apex (OpenMS); AppliedProcessingStep (OpenMS::IdentificationDataInternal); Area (OpenMS); AreaIterator (OpenMS::Internal); Args (OpenMS::Internal); AScore (OpenMS); MSQuantifications::Assay (OpenMS); AsymmetricStatistics (OpenMS::Math); QcMLFile::Attachment (OpenMS); AverageLinkage (OpenMS); AveragePosition (OpenMS::Math); AxisPainter (OpenMS); AxisTickCalculator (OpenMS); AxisWidget (OpenMS)

B: Base64 (OpenMS); BaseException (OpenMS::Exception); BaseFeature (OpenMS); BaseGroupFinder (OpenMS); BaseLabeler (OpenMS); BaseModel (OpenMS); BaseSuperimposer (OpenMS); BaseVisualizer (OpenMS); BaseVisualizerGUI (OpenMS); BasicProteinInferenceAlgorithm (OpenMS); BasicStatistics (OpenMS::Math); BayesianProteinInferenceAlgorithm (OpenMS); BernNorm (OpenMS); BiGaussFitter1D (OpenMS); BiGaussModel (OpenMS); BilinearInterpolation (OpenMS::Math); MzMLHandlerHelper::BinaryData (OpenMS::Internal); BinaryDataArray (OpenMS::Interfaces); BinaryTreeNode (OpenMS); EnzymaticDigestionLogModel::BindingSite_ (OpenMS); BinnedSharedPeakCount (OpenMS); BinnedSpectralContrastAngle (OpenMS); BinnedSpectrum (OpenMS); TargetedSpectraExtractor::BinnedSpectrumComparator (OpenMS); BinnedSpectrumCompareFunctor (OpenMS); BinnedSumAgreeingIntensities (OpenMS); BK_PrecPolicy (OpenMS::StringConversions); FeatureFinderAlgorithmIsotopeWavelet::BoxElement (OpenMS); IsotopeWaveletTransform::BoxElement (OpenMS); BSpline (eol_bspline); BSpline2d (OpenMS); BufferOverflow (OpenMS::Exception); QTCluster::BulkData (OpenMS); Bzip2Ifstream (OpenMS); Bzip2InputStream (OpenMS)

C: CachedmzML (OpenMS); CachedMzMLHandler (OpenMS::Internal); CachedSwathFileConsumer (OpenMS); InternalCalibration::CalibrantStats_ (OpenMS); CalibrationData (OpenMS); ItraqConstants::ChannelInfo (OpenMS); IsotopeCluster::ChargedIndexSet (OpenMS); ChargePair (OpenMS); TheoreticalSpectrumGenerationDialog::CheckBox (OpenMS); Chromatogram (OpenMS::Interfaces); MzMLHandler::ChromatogramData (OpenMS::Internal); ChromatogramExtractor (OpenMS); ChromatogramExtractorAlgorithm (OpenMS); ChromatogramMeta (OpenMS::Interfaces); ChromatogramPeak (OpenMS); ChromatogramSettings (OpenMS); ChromatogramTools (OpenMS); ChromeleonFile (OpenMS); ChromExtractParams (OpenMS); MSSpectrum::Chunk (OpenMS); MSSpectrum::Chunks (OpenMS); Citation (OpenMS); EnzymaticDigestionLogModel::CleavageModel_ (OpenMS); OPXLDataStructs::CLSMScoreComparator (OpenMS); ClusterAnalyzer (OpenMS); ClusterFunctor (OpenMS); ClusterHierarchical (OpenMS); ClusteringGrid (OpenMS); ClusterProxyKD (OpenMS); MzTab::CMMzTabStream (OpenMS); CmpHypothesesByScore (OpenMS); CmpMassTraceByMZ (OpenMS); CoarseIsotopePatternGenerator (OpenMS); ColorBrewer (OpenMS::GUIHelpers); Colorizer (OpenMS); ColorSelector (OpenMS); Colorizer::ColorWithUndo_ (OpenMS); ConsensusMap::ColumnHeader (OpenMS); Command (OpenMS::Internal); TargetedSpectraExtractor::Comparator (OpenMS); MapAlignmentAlgorithmSpectrumAlignment::Compare (OpenMS); AccurateMassSearchEngine::CompareEntryAndMass_ (OpenMS); CompareMzTabMMatchRef (OpenMS); ComplementFilter (OpenMS); ComplementMarker (OpenMS); CompleteLinkage (OpenMS); CompNovoIdentification (OpenMS); CompNovoIdentificationBase (OpenMS); CompNovoIdentificationCID (OpenMS); CompNovoIonScoring (OpenMS); CompNovoIonScoringBase (OpenMS); CompNovoIonScoringCID (OpenMS); Compomer (OpenMS); MRMFeatureQC::ComponentGroupPairQCs (OpenMS); MRMFeaturePicker::ComponentGroupParams (OpenMS); MRMFeatureQC::ComponentGroupQCs (OpenMS); MRMFeaturePicker::ComponentParams (OpenMS); MRMFeatureQC::ComponentQCs (OpenMS); Compound (OpenMS::TargetedExperimentHelper); SiriusMSFile::CompoundInfo (OpenMS); MetaboTargetedAssay::CompoundSpectrumPair (OpenMS); MetaboTargetedAssay::CompoundTargetDecoyPair (OpenMS); CompressedInputSource (OpenMS); ConfidenceScoring (OpenMS); Configuration (OpenMS::TargetedExperimentHelper); ConnectedComponent (OpenMS); ConsensusFeature (OpenMS); ConsensusIDAlgorithm (OpenMS); ConsensusIDAlgorithmAverage (OpenMS); ConsensusIDAlgorithmBest (OpenMS); ConsensusIDAlgorithmIdentity (OpenMS); ConsensusIDAlgorithmPEPIons (OpenMS); ConsensusIDAlgorithmPEPMatrix (OpenMS); ConsensusIDAlgorithmRanks (OpenMS); ConsensusIDAlgorithmSimilarity (OpenMS); ConsensusIDAlgorithmWorst (OpenMS); ConsensusMap (OpenMS); ConsensusMapMergerAlgorithm (OpenMS); ConsensusMapNormalizerAlgorithmMedian (OpenMS); ConsensusMapNormalizerAlgorithmQuantile (OpenMS); ConsensusMapNormalizerAlgorithmThreshold (OpenMS); ConsensusXMLFile (OpenMS); ConsensusXMLHandler (OpenMS::Internal); ConsoleUtils (OpenMS); AASequence::ConstIterator (OpenMS); HashGrid::ConstIterator (OpenMS); NASequence::ConstIterator (OpenMS); ConstRefVector (OpenMS); ConstRefVector::ConstRefVectorConstIterator (OpenMS); ConstRefVector::ConstRefVectorIterator (OpenMS); Contact (OpenMS::TargetedExperimentHelper); ContactPerson (OpenMS); ContactPersonVisualizer (OpenMS); MSExperiment::ContainerAdd_ (OpenMS); MSExperiment::ContainerAdd_< ContainerValueType, false > (OpenMS); MSExperiment::ContainerAdd_< ContainerValueType, true > (OpenMS); RawMSSignalSimulation::ContaminantInfo (OpenMS); Contaminants (OpenMS); Contaminants::ContaminantsSummary (OpenMS); ContinuousWaveletTransform (OpenMS); ContinuousWaveletTransformNumIntegration (OpenMS); ControlledVocabulary (OpenMS); ConversionError (OpenMS::Exception); ConvexHull2D (OpenMS); CrossLinksDB (OpenMS); OPXLDataStructs::CrossLinkSpectrumMatch (OpenMS); CsiFingerIdMzTabWriter::CsiAdapterHit (OpenMS); CsiFingerIdMzTabWriter::CsiAdapterIdentification (OpenMS); CsiFingerIdMzTabWriter::CsiAdapterRun (OpenMS); CsiFingerIdMzTabWriter (OpenMS); CsvFile (OpenMS); CSVWriter (OpenSwath); CubicSpline2d (OpenMS); CV (OpenMS::TargetedExperimentHelper); CVMappingFile (OpenMS); CVMappingRule (OpenMS); CVMappings (OpenMS); CVMappingTerm (OpenMS); CVReference (OpenMS); ControlledVocabulary::CVTerm (OpenMS); CVTerm (OpenMS); SemanticValidator::CVTerm (OpenMS::Internal); CVTermList (OpenMS); CVTermListInterface (OpenMS)

D: EGHFitter1D::Data (OpenMS); EmgFitter1D::Data (OpenMS); OptimizePeakDeconvolution::Data (OpenMS); OptimizePick::Data (OpenMS); TwoDOptimization::Data (OpenMS); MzIdentMLDOMHandler::DatabaseInput (OpenMS::Internal); DataFilters::DataFilter (OpenMS); DataFilterDialog (OpenMS); DataFilters (OpenMS); DataMatrix (OpenSwath); TransformationModel::DataPoint (OpenMS); DataProcessing (OpenMS); DataProcessingVisualizer (OpenMS); DataSelectionTabs (OpenMS); DataTabBase (OpenMS); DataValue (OpenMS); Date (OpenMS); DateTime (OpenMS); DaTrait (OpenMS); DBoundingBox (OpenMS); DBSearchParam (OpenMS::IdentificationDataInternal); MzIdentMLDOMHandler::DBSequence (OpenMS::Internal); DBSuitability (OpenMS); DBSuitability_friend (OpenMS); DeconvolvedSpectrum (OpenMS); DecoyGenerator (OpenMS); DecoyHelper (OpenMS); DecoyHelper::DecoyStatistics (OpenMS); FalseDiscoveryRate::DecoyStringHelper (OpenMS); DefaultParamHandler (OpenMS); Deisotoper (OpenMS); MultiplexDeltaMasses::DeltaMass (OpenMS); DeNovoAlgorithm (OpenMS); DeNovoIdentification (OpenMS); DeNovoIonScoring (OpenMS); DeNovoPostScoring (OpenMS); DepletedIDPool (OpenMS::Exception); ACNode::DepthHits (OpenMS); SvmTheoreticalSpectrumGenerator::DescriptorSet (OpenMS); DetectabilitySimulation (OpenMS); IDBoostGraph::dfs_ccsplit_visitor (OpenMS::Internal); DiaPrescore (OpenMS); DIAScoring (OpenMS); DIATreeTab (OpenMS); Digestion (OpenMS); DigestionEnzyme (OpenMS); DigestionEnzymeDB (OpenMS); DigestionEnzymeProtein (OpenMS); DigestionEnzymeRNA (OpenMS); IDFilter::DigestionFilter (OpenMS); DigestionVisualizer (OpenMS); DigestSimulation (OpenMS); DimBase (OpenMS); DimIM (OpenMS); DimINT (OpenMS); DimMapper (OpenMS); DimMZ (OpenMS); DimRT (OpenMS); DIntervalBase (OpenMS::Internal); DistanceMatrix (OpenMS); FeatureDistance::DistanceParams_ (OpenMS); ColorBrewer::Distinct (OpenMS::GUIHelpers); DivisionByZero (OpenMS::Exception); DocumentIdentifier (OpenMS); DocumentIdentifierVisualizer (OpenMS); DocumentIDTagger (OpenMS); ListUtils::DoubleTolerancePredicate_ (OpenMS); DPeak (OpenMS); DPosition (OpenMS); DRange (OpenMS); DTA2DFile (OpenMS); DTAFile (OpenMS)

E: EDTAFile (OpenMS); EGHFitter1D (OpenMS); EGHFitter1D::EGHFitterFunctor (OpenMS); EGHModel (OpenMS); EGHTraceFitter (OpenMS); EGHTraceFitter::EGHTraceFunctor (OpenMS); EmgFitter1D::EgmFitterFunctor (OpenMS); Element (OpenMS); QTCluster::Element (OpenMS); ElementDB (OpenMS); ElementNotFound (OpenMS::Exception); ElutionModelFitter (OpenMS); ElutionPeakDetection (OpenMS); EmgFitter1D (OpenMS); EmgGradientDescent (OpenMS); EmgGradientDescent_friend (OpenMS); EmgModel (OpenMS); EmgScoring (OpenMS); EmpiricalFormula (OpenMS); XMLHandler::EndParsingSoftly (OpenMS::Internal); EnhancedTabBar (OpenMS); EnhancedTabBarWidgetInterface (OpenMS); EnhancedWorkspace (OpenMS); EnzymaticDigestion (OpenMS); EnzymaticDigestionLogModel (OpenMS); EuclideanSimilarity (OpenMS); ExperimentalDesign (OpenMS); ExperimentalDesignFile (OpenMS); ExperimentalSettings (OpenMS); ExperimentalSettingsVisualizer (OpenMS); ExposedVector (OpenMS); ExtendedIsotopeFitter1D (OpenMS); ExtendedIsotopeModel (OpenMS); ExternalProcess (OpenMS); ExternalProcessMBox (OpenMS); ChromatogramExtractorAlgorithm::ExtractionCoordinates (OpenMS)

F: Factory (OpenMS); FactoryBase (OpenMS); FailedAPICall (OpenMS::Exception); FAIMSHelper (OpenMS); FakeProcess (OpenMS); FalseDiscoveryRate (OpenMS); FASTAContainer (OpenMS); FASTAContainer< TFI_File > (OpenMS); FASTAContainer< TFI_Vector > (OpenMS); FASTAFile::FASTAEntry (OpenMS); FASTAFile (OpenMS); Feature (OpenMS); FeatureFinderAlgorithmMetaboIdent::FeatureCompare (OpenMS); FeatureFinderIdentificationAlgorithm::FeatureCompare (OpenMS); AbsoluteQuantitationStandards::featureConcentration (OpenMS); FeatureDeconvolution (OpenMS); FeatureDistance (OpenMS); FeatureEditDialog (OpenMS); FeatureFileOptions (OpenMS); FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides (OpenMS); FeatureFinderAlgorithmMetaboIdent::FeatureFilterQuality (OpenMS); FeatureFinderIdentificationAlgorithm::FeatureFilterQuality (OpenMS); FeatureFinder (OpenMS); FeatureFinderAlgorithm (OpenMS); FeatureFinderAlgorithmIsotopeWavelet (OpenMS); FeatureFinderAlgorithmMetaboIdent (OpenMS); FeatureFinderAlgorithmMRM (OpenMS); FeatureFinderAlgorithmPicked (OpenMS); FeatureFinderAlgorithmPickedHelperStructs (OpenMS); FeatureFinderDefs (OpenMS); FeatureFinderIdentificationAlgorithm (OpenMS); FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound (OpenMS); FeatureFinderMultiplexAlgorithm (OpenMS); FeatureFindingMetabo (OpenMS); FeatureGroupingAlgorithm (OpenMS); FeatureGroupingAlgorithmKD (OpenMS); FeatureGroupingAlgorithmLabeled (OpenMS); FeatureGroupingAlgorithmQT (OpenMS); FeatureGroupingAlgorithmUnlabeled (OpenMS); FeatureHandle (OpenMS); FeatureHandle::FeatureHandleMutable_ (OpenMS); FeatureHypothesis (OpenMS); FeatureMap (OpenMS); FeatureMapping (OpenMS); FeatureMapping::FeatureMappingInfo (OpenMS); FeatureOpenMS (OpenMS); FeatureOverlapFilter (OpenMS); FeatureSummary (OpenMS); FeatureMapping::FeatureToMs2Indices (OpenMS); FeatureXMLFile (OpenMS); FeatureXMLHandler (OpenMS::Internal); IsotopeWavelet::fi_ (OpenMS); FIAMSDataProcessor (OpenMS); FIAMSScheduler (OpenMS); FidHandler (OpenMS::Internal); File (OpenMS); FileEmpty (OpenMS::Exception); FileHandler (OpenMS); FileMapping (OpenMS::Internal); FileNameTooLong (OpenMS::Exception); FileNotFound (OpenMS::Exception); FileNotReadable (OpenMS::Exception); FileNotWritable (OpenMS::Exception); FileTypeList (OpenMS); FileTypes (OpenMS); FileWatcher (OpenMS); FilterableList (OpenMS::Internal); FileTypeList::FilterElements_ (OpenMS); FilterFunctor (OpenMS); FilterList (OpenMS::Internal); FineIsotopePatternGenerator (OpenMS); SiriusAdapterAlgorithm::Fingerid (OpenMS); Fitter1D (OpenMS); FlagSet (OpenMS); FLASHDeconvAlgorithm (OpenMS); FLASHDeconvFeatureFile (OpenMS); FLASHDeconvHelperStructs (OpenMS); FLASHDeconvSpectrumFile (OpenMS); FLASHDeconvTabWidget (OpenMS::Internal); FLASHDeconvWizardBase (OpenMS); FloatDataArray (OpenMS::DataArrays); RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ (OpenMS::Internal); FragmentMassError (OpenMS); FullSwathFileConsumer (OpenMS); FuzzyStringComparator (OpenMS); FWHM (OpenMS)

G: GammaDistributionFitter::GammaDistributionFitResult (OpenMS::Math); GammaDistributionFitter (OpenMS::Math); GaussFilter (OpenMS); GaussFilterAlgorithm (OpenMS); GaussFitter::GaussFitResult (OpenMS::Math); GaussFitter (OpenMS::Math); GaussFitter1D (OpenMS); SignalToNoiseEstimator::GaussianEstimate (OpenMS); GaussModel (OpenMS); GaussTraceFitter (OpenMS); GaussTraceFitter::GaussTraceFunctor (OpenMS); LevMarqFitter1D::GenericFunctor (OpenMS); TraceFitter::GenericFunctor (OpenMS); IDFilter::GetMatchingItems (OpenMS); IDBoostGraph::GetPosteriorVisitor (OpenMS::Internal); IDBoostGraph::GetScoreTgTVisitor (OpenMS::Internal); ConfidenceScoring::GLM_ (OpenMS); GlobalExceptionHandler (OpenMS::Exception); GNPSMetaValueFile (OpenMS); GNPSMGFFile (OpenMS); GNPSQuantificationFile (OpenMS); GoodDiffFilter (OpenMS); Gradient (OpenMS); GradientVisualizer (OpenMS); Gravitator (OpenMS); GridBasedCluster (OpenMS); GridBasedClustering (OpenMS); GridFeature (OpenMS); GridSearch (OpenMS); GUILock (OpenMS::GUIHelpers); GUIProgressLoggerImpl (OpenMS); GumbelDistributionFitter::GumbelDistributionFitResult (OpenMS::Math); GumbelMaxLikelihoodFitter::GumbelDistributionFitResult (OpenMS::Math); GumbelDistributionFitter (OpenMS::Math); GumbelMaxLikelihoodFitter (OpenMS::Math); GzipIfstream (OpenMS); GzipInputStream (OpenMS)

I: IBSpectraFile (OpenMS); IChromatogramsReader (OpenMS::Interfaces); IChromatogramsWriter (OpenMS::Interfaces); ICPLLabeler (OpenMS); IDataFrameWriter (OpenSwath); IDBoostGraph (OpenMS::Internal); IDConflictResolverAlgorithm (OpenMS); IDDecoyProbability (OpenMS); Identification (OpenMS); IdentificationData (OpenMS); IdentificationDataConverter (OpenMS); IdentificationHit (OpenMS); Ms2IdentificationRate::IdentificationRateData (OpenMS); IDRipper::IdentificationRuns (OpenMS); IdentificationSummary (OpenMS); IdentifiedCompound (OpenMS::IdentificationDataInternal); IdentifiedMolecule (OpenMS::IdentificationDataInternal); IdentifiedSequence (OpenMS::IdentificationDataInternal); IDFilter (OpenMS); IDMapper (OpenMS); IDMergerAlgorithm (OpenMS); MzTab::IDMzTabStream (OpenMS); IDRipper (OpenMS); IDScoreGetterSetter (OpenMS); IDScoreSwitcherAlgorithm (OpenMS); IdXMLFile (OpenMS); InclusionExclusionList::IEWindow (OpenMS); IFeature (OpenSwath); IllegalArgument (OpenMS::Exception); IllegalPosition (OpenMS::Exception); IllegalSelfOperation (OpenMS::Exception); IllegalTreeOperation (OpenMS::Exception); ILPDCWrapper (OpenMS); IMDataConverter (OpenMS); MobilityPeak2D::IMLess (OpenMS); MSSpectrum::IMLess (OpenMS); IMRMFeature (OpenSwath); IMSAlphabet (OpenMS::ims); IMSAlphabetParser (OpenMS::ims); IMSAlphabetTextParser (OpenMS::ims); IMSDataConsumer (OpenMS::Interfaces); IMSElement (OpenMS::ims); IMSIsotopeDistribution (OpenMS::ims); IMTypes (OpenMS); IncludeExcludeTarget (OpenMS); InclusionExclusionList (OpenMS); IncompatibleIterators (OpenMS::Exception); IndentedStream (OpenMS); Index (OpenMS); IndexedMzMLDecoder (OpenMS); IndexedMzMLFileLoader (OpenMS); IndexedMzMLHandler (OpenMS::Internal); FeatureHandle::IndexLess (OpenMS); PSLPFormulation::IndexLess (OpenMS); IndexOverflow (OpenMS::Exception); PSLPFormulation::IndexTriple (OpenMS); IndexUnderflow (OpenMS::Exception); INIFileEditorWindow (OpenMS); InIntensityRange (OpenMS); INIUpdater (OpenMS); InMSLevelRange (OpenMS); InMzRange (OpenMS); InPrecursorMZRange (OpenMS); InputFile (OpenMS::IdentificationDataInternal); InputFile (OpenMS); InputFileList (OpenMS::Internal); FuzzyStringComparator::InputLine (OpenMS); InRTRange (OpenMS); InspectInfile (OpenMS); InspectOutfile (OpenMS); Instrument (OpenMS); Instrument (OpenMS::TargetedExperimentHelper); InstrumentSettings (OpenMS); InstrumentSettingsVisualizer (OpenMS); InstrumentVisualizer (OpenMS); ClusterFunctor::InsufficientInput (OpenMS); IntegerDataArray (OpenMS::DataArrays); IntegerMassDecomposer (OpenMS::ims); IntensityBalanceFilter (OpenMS); IntensityIteratorWrapper (OpenMS::Internal); ChromatogramPeak::IntensityLess (OpenMS); MobilityPeak1D::IntensityLess (OpenMS); MobilityPeak2D::IntensityLess (OpenMS); Peak1D::IntensityLess (OpenMS); Peak2D::IntensityLess (OpenMS); InternalCalibration (OpenMS); InternalToolError (OpenMS::Exception); InterpolationModel (OpenMS); TransformationModelInterpolated::Interpolator (OpenMS); Interpretation (OpenMS::TargetedExperimentHelper); InvalidIterator (OpenMS::Exception); InvalidParameter (OpenMS::Exception); InvalidRange (OpenMS::Exception); InvalidSize (OpenMS::Exception); InvalidValue (OpenMS::Exception); IOException (OpenMS::Exception); TOPPASToolVertex::IOInfo (OpenMS); IonDetector (OpenMS); IonDetectorVisualizer (OpenMS); IonIdentityMolecularNetworking (OpenMS); IonizationSimulation (OpenMS); IonMobilityScoring (OpenMS); CompNovoIonScoringBase::IonScore (OpenMS); DeNovoIonScoring::IonScore (OpenMS); IonSource (OpenMS); IonSourceVisualizer (OpenMS); SvmTheoreticalSpectrumGenerator::IonType (OpenMS); IPeptideIds (OpenMS); ProteinResolver::ISDGroup (OpenMS); IsEmptySpectrum (OpenMS); IDScoreGetterSetter::IsHitType (OpenMS); IDScoreGetterSetter::IsIDType (OpenMS); ISignalToNoise (OpenSwath); IsInCollisionEnergyRange (OpenMS); IsInIsolationWindow (OpenMS); IsInIsolationWindowSizeRange (OpenMS); IsobaricChannelExtractor (OpenMS); IsobaricQuantitationMethod::IsobaricChannelInformation (OpenMS); IsobaricIsotopeCorrector (OpenMS); IsobaricNormalizer (OpenMS); IsobaricQuantifier (OpenMS); IsobaricQuantifierStatistics (OpenMS); IsobaricQuantitationMethod (OpenMS); IsoSpecGeneratorWrapper (OpenMS); IsoSpecOrderedGeneratorWrapper (OpenMS); IsoSpecThresholdGeneratorWrapper (OpenMS); IsoSpecThresholdWrapper (OpenMS); IsoSpecTotalProbGeneratorWrapper (OpenMS); IsoSpecTotalProbWrapper (OpenMS); IsoSpecWrapper (OpenMS); IsotopeCluster (OpenMS); IsotopeDiffFilter (OpenMS); IsotopeDistribution (OpenMS); IsotopeDistributionCache (OpenMS); IsotopeFitter1D (OpenMS); IsotopeLabelingMDVs (OpenMS); IsotopeMarker (OpenMS); IsotopeModel (OpenMS); FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern (OpenMS); IsotopePatternGenerator (OpenMS); IsotopeWavelet (OpenMS); IsotopeWaveletTransform (OpenMS); ISpectraReader (OpenMS::Interfaces); ISpectraWriter (OpenMS::Interfaces); ISpectrumAccess (OpenSwath); IsZoomSpectrum (OpenMS); Iterator; AASequence::Iterator (OpenMS); HashGrid::Iterator (OpenMS); NASequence::Iterator (OpenMS); IteratorWrapper (OpenMS::IdentificationDataInternal); ITransitionGroup (OpenSwath); ItraqConstants (OpenMS); ItraqEightPlexQuantitationMethod (OpenMS); ItraqFourPlexQuantitationMethod (OpenMS); ITRAQLabeler (OpenMS)

J: JavaInfo (OpenMS)

K: KDTree (KDTree); KDTreeFeatureMaps (OpenMS); KDTreeFeatureNode (OpenMS); KroenikFile (OpenMS)

L: MultiplexDeltaMassesGenerator::Label (OpenMS); LabeledPairFinder (OpenMS); LabelFreeLabeler (OpenMS); IDBoostGraph::LabelVisitor (OpenMS::Internal); LayerAnnotatorAMS (OpenMS); LayerAnnotatorBase (OpenMS); LayerAnnotatorOSW (OpenMS); LayerAnnotatorPeptideID (OpenMS); LayerData1DBase (OpenMS); LayerData1DChrom (OpenMS); LayerData1DIonMobility (OpenMS); LayerData1DPeak (OpenMS); LayerDataBase (OpenMS); LayerDataChrom (OpenMS); LayerDataConsensus (OpenMS); LayerDataDefs (OpenMS); LayerDataFeature (OpenMS); LayerDataIdent (OpenMS); LayerDataIonMobility (OpenMS); LayerDataPeak (OpenMS); LayerListView (OpenMS); LayerStack (OpenMS); LayerStatistics (OpenMS); LayerStatisticsConsensusMap (OpenMS); LayerStatisticsDialog (OpenMS); LayerStatisticsFeatureMap (OpenMS); LayerStatisticsIdent (OpenMS); LayerStatisticsPeakMap (OpenMS); LayerStoreData (OpenMS); LayerStoreDataConsensusMapAll (OpenMS); LayerStoreDataConsensusMapVisible (OpenMS); LayerStoreDataFeatureMapAll (OpenMS); LayerStoreDataFeatureMapVisible (OpenMS); LayerStoreDataIdentAll (OpenMS); LayerStoreDataIdentVisible (OpenMS); LayerStoreDataPeakMapAll (OpenMS); LayerStoreDataPeakMapVisible (OpenMS); LevMarqFitter1D (OpenMS); LibSVMEncoder (OpenMS); LightCompound (OpenSwath); LightModification (OpenSwath); LightProtein (OpenSwath); LightTargetedExperiment (OpenSwath); LightTransition (OpenSwath); LinearInterpolation (OpenMS::Math); LinearRegression (OpenMS::Math); LinearRegressionWithoutIntercept (OpenMS::Math); LinearResampler (OpenMS); LinearResamplerAlign (OpenMS); ListEditor (OpenMS); ListEditorDelegate (OpenMS::Internal); ListFilterDialog (OpenMS); ListTable (OpenMS::Internal); ListUtils (OpenMS); LocalLinearMap::LLMParam (OpenMS); LocalLinearMap (OpenMS); InternalCalibration::LockMass (OpenMS); LogStreamBuf::LogCacheStruct (OpenMS::Logger); LogConfigHandler (OpenMS); FLASHDeconvHelperStructs::LogMzPeak (OpenMS); LogStream (OpenMS::Logger); LogStreamBuf (OpenMS::Logger); LogStreamNotifier (OpenMS::Logger); LogWindow (OpenMS); SimpleTSGXLMS::LossIndex (OpenMS); TheoreticalSpectrumGeneratorXLMS::LossIndex (OpenMS); LowessSmoothing (OpenMS); LPWrapper (OpenMS); PercolatorFeatureSetHelper::lq_PeptideEvidence (OpenMS); PercolatorFeatureSetHelper::lq_ProteinHit (OpenMS)

M: MapAlignmentAlgorithmIdentification (OpenMS); MapAlignmentAlgorithmKD (OpenMS); MapAlignmentAlgorithmPoseClustering (OpenMS); MapAlignmentAlgorithmSpectrumAlignment (OpenMS); MapAlignmentAlgorithmTreeGuided (OpenMS); MapAlignmentEvaluationAlgorithm (OpenMS); MapAlignmentEvaluationAlgorithmPrecision (OpenMS); MapAlignmentEvaluationAlgorithmRecall (OpenMS); MapAlignmentTransformer (OpenMS); MapConversion (OpenMS); ProteinIdentification::Mapping (OpenMS); AccurateMassSearchEngine::MappingEntry_ (OpenMS); MappingParam (OpenMS::Internal); ConsensusFeature::MapsLess (OpenMS); ModifiedPeptideGenerator::MapToResidueType (OpenMS); MapUtilities (OpenMS); MarkerMower (OpenMS); MascotGenericFile (OpenMS); MascotInfile (OpenMS); MascotRemoteQuery (OpenMS); MascotXMLFile (OpenMS); MascotXMLHandler (OpenMS::Internal); MassAnalyzer (OpenMS); MassAnalyzerVisualizer (OpenMS); MassDecomposer (OpenMS::ims); MassDecomposition (OpenMS); MassDecompositionAlgorithm (OpenMS); MassExplainer (OpenMS); FLASHDeconvHelperStructs::MassFeature (OpenMS); MassFeatureTrace (OpenMS); IMSAlphabet::MassSortingCriteria_ (OpenMS::ims); FeatureFinderAlgorithmPickedHelperStructs::MassTrace (OpenMS); MassTrace (OpenMS); FeatureFinderAlgorithmMetaboIdent::MassTraceBounds (OpenMS); MasstraceCorrelator (OpenMS); MassTraceDetection (OpenMS); FeatureFinderAlgorithmPickedHelperStructs::MassTraces (OpenMS); TargetedSpectraExtractor::Match (OpenMS); MatchedIterator (OpenMS); Matrix (Eigen); Matrix (OpenMS); MaxLikeliFitter1D (OpenMS); mean_and_stddev (OpenSwath); SysInfo::MemUsage (OpenMS); MessagePasserFactory (OpenMS::Internal); MetaboliteFeatureDeconvolution (OpenMS); MetaboliteSpectralMatching (OpenMS); MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping (OpenMS); MetaboTargetedAssay (OpenMS); MetaboTargetedTargetDecoy (OpenMS); MetaDataBrowser (OpenMS); MetaInfo (OpenMS); MetaInfoDescription (OpenMS); MetaInfoDescriptionVisualizer (OpenMS); MetaInfoInterface (OpenMS); MetaInfoInterfaceUtils (OpenMS); MetaInfoRegistry (OpenMS); MetaInfoVisualizer (OpenMS); MetaKeyGetter (OpenMS::Detail); MinimumDistance (OpenMS); MissedCleavages (OpenMS); MissingInformation (OpenMS::Exception); MobilityPeak1D::MobilityLess (OpenMS); MobilityPeak1D (OpenMS); MobilityPeak2D (OpenMS); Mobilogram (OpenMS); MockFeature (OpenSwath); MockMRMFeature (OpenSwath); MockSignalToNoise (OpenSwath); MockTransitionGroup (OpenSwath); TraceFitter::ModelData (OpenMS); ModelDescription (OpenMS); Modification (OpenMS); Peptide::Modification (OpenMS::TargetedExperimentHelper); ModificationDefinition (OpenMS); ModificationDefinitionsSet (OpenMS); MzIdentMLDOMHandler::ModificationParam (OpenMS::Internal); ModificationsDB; ModificationsDB (OpenMS); ModificationVisualizer (OpenMS); ModifiedNASequenceGenerator (OpenMS); ModifiedPeptideGenerator (OpenMS); IdentificationData::ModifyMultiIndexAddProcessingStep (OpenMS); IdentificationData::ModifyMultiIndexAddScore (OpenMS); IdentificationData::ModifyMultiIndexRemoveParentMatches (OpenMS); MorpheusScore (OpenMS); MorphologicalFilter (OpenMS); MQExporterHelper::MQCommonOutputs; MQEvidence; MQExporterHelper; MQMsms; MRMAssay (OpenMS); MRMBatchFeatureSelector (OpenMS); MRMDecoy (OpenMS); MRMFeature (OpenMS); MRMFeatureFilter (OpenMS); MRMFeatureFinderScoring (OpenMS); MRMFeatureOpenMS (OpenMS); MRMFeaturePicker (OpenMS); MRMFeaturePickerFile (OpenMS); MRMFeatureQC (OpenMS); MRMFeatureQCFile (OpenMS); MRMFeatureSelector (OpenMS); MRMFeatureSelector_test (OpenMS); MRMFeatureSelectorQMIP (OpenMS); MRMFeatureSelectorScore (OpenMS); MRMFragmentSelection (OpenMS); MRMIonSeries (OpenMS); MRMMapping (OpenMS); MRMRTNormalizer (OpenMS); MRMScoring (OpenSwath); MRMTransitionGroup (OpenMS); MRMTransitionGroupPicker (OpenMS); MS2File (OpenMS); Ms2IdentificationRate (OpenMS); Ms2SpectrumStats (OpenMS); MSChromatogram (OpenMS); MSDataAggregatingConsumer (OpenMS); MSDataCachedConsumer (OpenMS); MSDataChainingConsumer (OpenMS); MSDataSqlConsumer (OpenMS); MSDataStoringConsumer (OpenMS); MSDataTransformingConsumer (OpenMS); MSDataWritingConsumer (OpenMS); ProteinResolver::MSDGroup (OpenMS); MSExperiment (OpenMS); ExperimentalDesign::MSFileSectionEntry (OpenMS); MsInspectFile (OpenMS); MSNumpressCoder (OpenMS); MSPFile (OpenMS); MSPGenericFile (OpenMS); MSPGenericFile_friend (OpenMS); MSQuantifications (OpenMS); MSSim (OpenMS); MSSpectrum (OpenMS); MSstatsFile (OpenMS); MSstatsFile::MSstatsLine_ (OpenMS); MSstatsFile::MSstatsTMTLine_ (OpenMS); MultiGradient (OpenMS); MultiGradientSelector (OpenMS); MultiplexClustering (OpenMS); MultiplexDeltaMasses (OpenMS); MultiplexDeltaMassesGenerator (OpenMS); MultiplexClustering::MultiplexDistance (OpenMS); MultiplexFilteredMSExperiment (OpenMS); MultiplexFilteredPeak (OpenMS); MultiplexFiltering (OpenMS); MultiplexFilteringCentroided (OpenMS); MultiplexFilteringProfile (OpenMS); MultiplexIsotopicPeakPattern (OpenMS); MultiplexSatelliteCentroided (OpenMS); MultiplexSatelliteProfile (OpenMS); MzCalibration (OpenMS); MzDataFile (OpenMS); MzDataHandler (OpenMS::Internal); MzDataValidator (OpenMS::Internal); MzIdentMLDOMHandler (OpenMS::Internal); MzIdentMLFile (OpenMS); MzIdentMLHandler (OpenMS::Internal); MzIdentMLValidator (OpenMS::Internal); MobilityPeak2D::MZLess (OpenMS); MSChromatogram::MZLess (OpenMS); Peak1D::MZLess (OpenMS); Peak2D::MZLess (OpenMS); MzMLFile (OpenMS); MzMLHandler (OpenMS::Internal); MzMLHandlerHelper (OpenMS::Internal); MzMLSpectrumDecoder (OpenMS); MzMLSqliteHandler (OpenMS::Internal); MzMLSqliteSwathHandler (OpenMS::Internal); MzMLSwathFileConsumer (OpenMS); MzMLValidator (OpenMS::Internal); MzQCFile (OpenMS); MzQuantMLFile (OpenMS); MzQuantMLHandler (OpenMS::Internal); MzQuantMLValidator (OpenMS::Internal); MzTab (OpenMS); MzTabAssayMetaData (OpenMS); MzTabBase (OpenMS); MzTabBoolean (OpenMS); MzTabContactMetaData (OpenMS); MzTabCVMetaData (OpenMS); MzTabDouble (OpenMS); MzTabDoubleList (OpenMS); MzTabFile (OpenMS); MzTabInstrumentMetaData (OpenMS); MzTabInteger (OpenMS); MzTabIntegerList (OpenMS); MzTabM (OpenMS); MzTabMAssayMetaData (OpenMS); MzTabMDatabaseMetaData (OpenMS); MzTabMetaData (OpenMS); MzTabMFile (OpenMS); MzTabMMetaData (OpenMS); MzTabMMSRunMetaData (OpenMS); MzTabModification (OpenMS); MzTabModificationList (OpenMS); MzTabModificationMetaData (OpenMS); MzTabMSmallMoleculeEvidenceSectionRow (OpenMS); MzTabMSmallMoleculeFeatureSectionRow (OpenMS); MzTabMSmallMoleculeSectionRow (OpenMS); MzTabMSRunMetaData (OpenMS); MzTabMStudyVariableMetaData (OpenMS); MzTabNucleicAcidSectionRow (OpenMS); MzTabOligonucleotideSectionRow (OpenMS); MzTabOSMSectionRow (OpenMS); MzTabParameter (OpenMS); MzTabParameterList (OpenMS); MzTabPeptideSectionRow (OpenMS); MzTabProteinSectionRow (OpenMS); MzTabPSMSectionRow (OpenMS); MzTabSampleMetaData (OpenMS); MzTabSmallMoleculeSectionRow (OpenMS); MzTabSoftwareMetaData (OpenMS); MzTabSpectraRef (OpenMS); MzTabString (OpenMS); MzTabStringList (OpenMS); MzTabStudyVariableMetaData (OpenMS); MZTrafoModel (OpenMS); MzXMLFile (OpenMS); MzXMLHandler (OpenMS::Internal)

O: O18Labeler (OpenMS); Observation (OpenMS::IdentificationDataInternal); ObservationMatch (OpenMS::IdentificationDataInternal); ObservationMatchGroup (OpenMS::IdentificationDataInternal); OfflinePrecursorIonSelection (OpenMS); OMSFile (OpenMS); OMSFileLoad (OpenMS::Internal); OMSFileStore (OpenMS::Internal); OMSSACSVFile (OpenMS); OMSSAXMLFile (OpenMS); OnDiscMSExperiment (OpenMS); OpenMSBuildInfo (OpenMS::Internal); OpenMSLineEdit (OpenMS::Internal); OpenMSOSInfo (OpenMS::Internal); OpenPepXLAlgorithm (OpenMS); OpenPepXLLFAlgorithm (OpenMS); OpenSwath_Ind_Scores (OpenMS); OpenSwath_Scores (OpenMS); OpenSwath_Scores_Usage (OpenMS); OpenSwathCalibrationWorkflow (OpenMS); OpenSwathDataAccessHelper (OpenMS); OpenSwathHelper (OpenMS); OpenSwathOSWWriter (OpenMS); OpenSwathScoring (OpenMS); OpenSwathTSVWriter (OpenMS); OpenSwathWorkflow (OpenMS); OpenSwathWorkflowBase (OpenMS); OpenSwathWorkflowSonar (OpenMS); OptimizePeakDeconvolution (OpenMS); OptimizePick (OpenMS); OptimizePick::OptPeakFunctor (OpenMS); OPXLDataStructs (OpenMS); OPXLHelper (OpenMS); OPXLSpectrumProcessingAlgorithms (OpenMS); OSBinaryDataArray (OpenSwath); OSChromatogram (OpenSwath); OSChromatogramMeta (OpenSwath); OSSpectrum (OpenSwath); OSSpectrumMeta (OpenSwath); OSWData (OpenMS); OSWFile (OpenMS); OSWHierarchy (OpenMS); OSWIndexTrace (OpenMS); OSWPeakGroup (OpenMS); OSWPeptidePrecursor (OpenMS); OSWProtein (OpenMS); OSWTransition (OpenMS); OutOfGrid (OpenMS::Exception); OutOfMemory (OpenMS::Exception); OutOfRange (OpenMS::Exception); OutputDirectory (OpenMS); OverlapDetector (OpenMS::GUIHelpers)

P: Painter1DBase (OpenMS); Painter1DChrom (OpenMS); Painter1DIonMobility (OpenMS); Painter1DPeak (OpenMS); Painter2DBase (OpenMS); Painter2DChrom (OpenMS); Painter2DConsensus (OpenMS); Painter2DFeature (OpenMS); Painter2DIdent (OpenMS); Painter2DIonMobility (OpenMS); Painter2DPeak (OpenMS); PainterBase (OpenMS); pair_hash (OpenSwath::Scoring); OfflinePrecursorIonSelection::PairComparatorSecondElement (OpenMS); AreaIterator::Param (OpenMS::Internal); Param (OpenMS); ParamCTDFile (OpenMS); ParamCWLFile (OpenMS); ParamEditor (OpenMS); ParamEditorDelegate (OpenMS::Internal); Param::ParamEntry (OpenMS); ParameterInformation (OpenMS); SiriusAdapterAlgorithm::ParameterModifier (OpenMS); SiriusAdapterAlgorithm::ParameterSection (OpenMS); Param::ParamIterator (OpenMS); Param::ParamNode (OpenMS); ParamTree (OpenMS::Internal); ParamValue (OpenMS); ParamXMLFile (OpenMS); ParamXMLHandler (OpenMS::Internal); ParentGroup (OpenMS::IdentificationDataInternal); ParentGroupSet (OpenMS::IdentificationDataInternal); ParentMatch (OpenMS::IdentificationDataInternal); ParentPeakMower (OpenMS); ParentSequence (OpenMS::IdentificationDataInternal); ParseError (OpenMS::Exception); ParseError; SiriusAdapterAlgorithm::Passatutto (OpenMS); IMSIsotopeDistribution::Peak (OpenMS::ims); Peak1D (OpenMS); Peak2D (OpenMS); PeakAlignment (OpenMS); PeptideHit::PeakAnnotation (OpenMS); PeakIntegrator::PeakArea (OpenMS); PeakPickerCWT::PeakArea_ (OpenMS); PeakIntegrator::PeakBackground (OpenMS); PeakPickerHiRes::PeakBoundary (OpenMS); PeakCandidate (OpenMS); PeakPickerMaxima::PeakCandidate (OpenMS); PeakFileOptions (OpenMS); PeakGroup (OpenMS); PeakIndex (OpenMS); PeakIntegrator (OpenMS); PeakIntensityPredictor (OpenMS); PeakMarker (OpenMS); PeakPickerCWT (OpenMS); PeakPickerHiRes (OpenMS); PeakPickerIterative (OpenMS); PeakPickerMaxima (OpenMS); PeakPickerMRM (OpenMS); PeakPickerSH (OpenMS); PeakShape (OpenMS); PeakIntegrator::PeakShapeMetrics (OpenMS); PeakSpectrumCompareFunctor (OpenMS); PeakTypeEstimator (OpenMS); PeakWidthEstimator (OpenMS); PenaltyFactors (OpenMS::OptimizationFunctions); PenaltyFactorsIntensity (OpenMS::OptimizationFunctions); IdentificationDataConverter::PepIDCompare (OpenMS); PepNovoInfile (OpenMS); PepNovoOutfile (OpenMS); Peptide (OpenMS::TargetedExperimentHelper); Peptide (OpenSwath); PeptideAndProteinQuant (OpenMS); FeatureFinderIdentificationAlgorithm::PeptideCompare (OpenMS); PeptideCompound (OpenMS::TargetedExperimentHelper); PeptideAndProteinQuant::PeptideData (OpenMS); IDFilter::PeptideDigestionFilter (OpenMS); ProteinResolver::PeptideEntry (OpenMS); MzIdentMLDOMHandler::PeptideEvidence (OpenMS::Internal); PeptideEvidence (OpenMS); PeptideHit (OpenMS); PeptideHitVisualizer (OpenMS); PeptideIdentification (OpenMS); PeptideIdentificationVisualizer (OpenMS); OPXLHelper::PeptideIDScoreComparator (OpenMS); PeptideIndexing (OpenMS); PeptideMass (OpenMS); PeptideProteinResolution (OpenMS); PeptideHit::PepXMLAnalysisResult (OpenMS); PepXMLFile (OpenMS); PepXMLFileMascot (OpenMS); OSWFile::PercolatorFeature (OpenMS); PercolatorFeatureSetHelper (OpenMS); PercolatorInfile (OpenMS); PercolatorOutfile (OpenMS); CompNovoIdentificationBase::Permut (OpenMS); PlainMSDataWritingConsumer (OpenMS); Plot1DCanvas (OpenMS); Plot1DGoToDialog (OpenMS); Plot1DPrefDialog (OpenMS::Internal); Plot1DWidget (OpenMS); Plot2DCanvas (OpenMS); Plot2DGoToDialog (OpenMS); Plot2DPrefDialog (OpenMS::Internal); Plot2DWidget (OpenMS); Plot3DCanvas (OpenMS); Plot3DOpenGLCanvas (OpenMS); Plot3DPrefDialog (OpenMS::Internal); Plot3DWidget (OpenMS); PlotCanvas (OpenMS); PlotWidget (OpenMS); PoseClusteringAffineSuperimposer (OpenMS); PoseClusteringShiftSuperimposer (OpenMS); ChromatogramPeak::PositionLess (OpenMS); MobilityPeak1D::PositionLess (OpenMS); MobilityPeak2D::PositionLess (OpenMS); Peak1D::PositionLess (OpenMS); Peak2D::PositionLess (OpenMS); PeakShape::PositionLess (OpenMS); Postcondition (OpenMS::Exception); PosteriorErrorProbabilityModel (OpenMS::Math); PpmTrait (OpenMS); FLASHDeconvHelperStructs::PrecalculatedAveragine (OpenMS); PrecisionWrapper (OpenMS); Precondition (OpenMS::Exception); Precursor (OpenMS); PrecursorCorrection (OpenMS); NucleicAcidSearchEngine::PrecursorInfo; PrecursorIonSelection (OpenMS); PrecursorIonSelectionPreprocessing (OpenMS); PrecursorMassComparator (OpenMS); PrecursorPurity (OpenMS); PrecursorVisualizer (OpenMS); SimpleSVM::Prediction (OpenMS); Prediction (OpenMS::TargetedExperimentHelper); FuzzyStringComparator::PrefixInfo_ (OpenMS); OPXLDataStructs::PreprocessedPairSpectra (OpenMS); SiriusAdapterAlgorithm::Preprocessing (OpenMS); IDBoostGraph::PrintAddressVisitor (OpenMS::Internal); ProbablePhosphoSites (OpenMS); ProcessingSoftware (OpenMS::IdentificationDataInternal); ProcessingStep (OpenMS::IdentificationDataInternal); Product (OpenMS); ProductModel (OpenMS); ProductModel< 2 > (OpenMS); ReactionMonitoringTransition::ProductMZLess (OpenMS); ProductVisualizer (OpenMS); ProgressLogger (OpenMS); ProgressLogger::ProgressLoggerImpl (OpenMS); SiriusAdapterAlgorithm::Project (OpenMS); LayerDataDefs::ProjectionData (OpenMS); ProteaseDB (OpenMS); ProteaseDigestion (OpenMS); Protein (OpenMS::TargetedExperimentHelper); Protein (OpenSwath); PeptideAndProteinQuant::ProteinData (OpenMS); ProteinResolver::ProteinEntry (OpenMS); IDBoostGraph::ProteinGroup (OpenMS::Internal); ProteinIdentification::ProteinGroup (OpenMS); ProteinHit (OpenMS); ProteinHit::ProteinHitAccessionHash (OpenMS); ProteinHit::ProteinHitPtrAccessionHash (OpenMS); ProteinHitVisualizer (OpenMS); ProteinIdentification (OpenMS); ProteinIdentificationVisualizer (OpenMS); ProteinInference (OpenMS); OPXLDataStructs::ProteinProteinCrossLink (OpenMS); ProteinResolver (OpenMS); ProtonDistributionModel (OpenMS); ProtXMLFile (OpenMS); PScore (OpenMS); PSLPFormulation (OpenMS); HyperScore::PSMDetail (OpenMS); PSMExplainedIonCurrent (OpenMS); PSProteinInference (OpenMS); PTMXMLFile (OpenMS); PTMXMLHandler (OpenMS::Internal); Publication (OpenMS::TargetedExperimentHelper); IsobaricChannelExtractor::PuritySate_ (OpenMS); PrecursorPurity::PurityScores (OpenMS); PythonInfo (OpenMS); PythonModuleRequirement (OpenMS::Internal); PythonSelector (OpenMS::Internal)

R: RAIICleanup (OpenMS); RandomShuffler (OpenMS::Math); Range (OpenMS); RangeBase (OpenMS); RangeIntensity (OpenMS); RangeManager (OpenMS); RangeManagerContainer (OpenMS); RangeMobility (OpenMS); RangeMZ (OpenMS); RangeRT (OpenMS); RangeStats (OpenMS); RangeStatsType (OpenMS); PeptideHit::RankLess (OpenMS); RANSAC (OpenMS::Math); RansacModel (OpenMS::Math); RansacModelLinear (OpenMS::Math); RansacModelQuadratic (OpenMS::Math); RANSACParam (OpenMS::Math); ConsensusFeature::Ratio (OpenMS); RawMSSignalSimulation (OpenMS); RawTandemMSSignalSimulation (OpenMS); ReactionMonitoringTransition (OpenMS); real_policies (boost::spirit::qi); StringUtilsHelper::real_policies_NANfixed_ (OpenMS); RealMassDecomposer (OpenMS::ims); RecentFilesMenu (OpenMS); IdentificationData::RefTranslator (OpenMS); RefVariant; RegularSwathFileConsumer (OpenMS); Base64::Reinterpreter32_ (OpenMS); Base64::Reinterpreter64_ (OpenMS); RequiredParameterNotGiven (OpenMS::Exception); Residue (OpenMS); ResidueDB (OpenMS); ResidueDB; ResidueModification (OpenMS); ResidueModification; ProteinResolver::ResolverResult (OpenMS); DecoyHelper::Result (OpenMS); FalseDiscoveryRate::DecoyStringHelper::Result (OpenMS); FeatureSummary::Result (OpenMS); IdentificationSummary::Result (OpenMS); MorpheusScore::Result (OpenMS); TIC::Result (OpenMS); RetentionTime (OpenMS::TargetedExperimentHelper); Ribonucleotide (OpenMS); RibonucleotideDB (OpenMS); RichPeak2D (OpenMS); IDRipper::RipFileContent (OpenMS); IDRipper::RipFileIdentifier (OpenMS); IDRipper::RipFileIdentifierIdxComparator (OpenMS); RNaseDB (OpenMS); RNaseDigestion (OpenMS); RNPxlFragmentAnnotationHelper (OpenMS::Internal); RNPxlMarkerIonExtractor (OpenMS); RNPxlModificationMassesResult (OpenMS); RNPxlModificationsGenerator (OpenMS); RNPxlReport (OpenMS); RNPxlReportRow (OpenMS); RNPxlReportRowHeader (OpenMS); ROCCurve (OpenMS::Math); MzTabNucleicAcidSectionRow::RowCompare (OpenMS); MzTabOligonucleotideSectionRow::RowCompare (OpenMS); MzTabOSMSectionRow::RowCompare (OpenMS); MzTabPeptideSectionRow::RowCompare (OpenMS); MzTabProteinSectionRow::RowCompare (OpenMS); MzTabPSMSectionRow::RowCompare (OpenMS); RTAlignment (OpenMS); ChromatogramPeak::RTLess (OpenMS); Mobilogram::RTLess (OpenMS); MSSpectrum::RTLess (OpenMS); MZTrafoModel::RTLess (OpenMS); Peak2D::RTLess (OpenMS); OSSpectrumMeta::RTLess (OpenSwath); ConfidenceScoring::RTNorm_ (OpenMS); FeatureFinderIdentificationAlgorithm::RTRegion (OpenMS); RTSimulation (OpenMS); AbsoluteQuantitationStandards::runConcentration (OpenMS); RWrapper (OpenMS)

S: Sample (OpenMS); ExperimentalDesign::SampleSection (OpenMS); SampleTreatment (OpenMS); SampleVisualizer (OpenMS); SaveImageDialog (OpenMS); SavitzkyGolayFilter (OpenMS); Scaler (OpenMS); Ms2SpectrumStats::ScanEvent (OpenMS); PSLPFormulation::ScanLess (OpenMS); ScanWindow (OpenMS); ScanWindowVisualizer (OpenMS); ScoredProcessingResult (OpenMS::IdentificationDataInternal); PeptideHit::ScoreLess (OpenMS); ProteinHit::ScoreLess (OpenMS); PeptideHit::ScoreMore (OpenMS); ProteinHit::ScoreMore (OpenMS); ScoreToTgtDecLabelPairs (OpenMS); ScoreType (OpenMS::IdentificationDataInternal); SearchEngineBase (OpenMS); ProteinIdentification::SearchParameters (OpenMS); FeatureFinderAlgorithmPickedHelperStructs::Seed (OpenMS); SeedListGenerator (OpenMS); MRMFeatureSelector::SelectorParameters (OpenMS); SpectraIDViewTab::SelfResizingTableView_ (OpenMS); SemanticValidator (OpenMS::Internal); PrecursorIonSelection::SeqTotalScoreMore (OpenMS); PeptideHit::SequenceLessComparator (OpenMS); SequestInfile (OpenMS); SequestOutfile (OpenMS); IDBoostGraph::SetPosteriorVisitor (OpenMS::Internal); shared_xerces_ptr (OpenMS::Internal); SignalProvider (OpenMS); SignalToNoiseEstimator (OpenMS); SignalToNoiseEstimatorMeanIterative (OpenMS); SignalToNoiseEstimatorMedian (OpenMS); SignalToNoiseEstimatorMedianRapid (OpenMS); SignalToNoiseOpenMS (OpenMS); SILACLabeler (OpenMS); SimpleOpenMSSpectraFactory (OpenMS); SimplePairFinder (OpenMS); SimpleTSGXLMS::SimplePeak (OpenMS); SimpleTSGXLMS::SimplePeakComparator (OpenMS); SimpleSearchEngineAlgorithm (OpenMS); SimpleSVM (OpenMS); SimpleTSGXLMS (OpenMS); SimProtein (OpenMS::SimTypes); SimRandomNumberGenerator (OpenMS::SimTypes); ROCCurve::simsortdec (OpenMS::Math); SingleLinkage (OpenMS); SingletonRegistry (OpenMS); SiriusAdapterAlgorithm::Sirius (OpenMS); SiriusAdapterAlgorithm (OpenMS); SiriusMzTabWriter::SiriusAdapterHit (OpenMS); SiriusMzTabWriter::SiriusAdapterIdentification (OpenMS); SiriusMzTabWriter::SiriusAdapterRun (OpenMS); SiriusFragmentAnnotation (OpenMS); SiriusMSFile (OpenMS); SiriusMzTabWriter (OpenMS); SiriusMzTabWriter::SiriusSpectrumMSInfo (OpenMS); SiriusFragmentAnnotation::SiriusTargetDecoySpectra (OpenMS); SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects (OpenMS); ConsensusFeature::SizeLess (OpenMS); SizeUnderflow (OpenMS::Exception); Software (OpenMS); SoftwareVisualizer (OpenMS); LPWrapper::SolverParam (OpenMS); SONARScoring (OpenMS); SourceFile (OpenMS); SourceFileVisualizer (OpenMS); SparseVector (Eigen); SpecArrayFile (OpenMS); MzMLFile::SpecInfo (OpenMS); SpectraMerger::SpectraDistance_ (OpenMS); IDMapper::SpectraIdentificationState (OpenMS); SpectraIDViewTab (OpenMS); SpectralMatch (OpenMS); SpectralMatchScoreComparator (OpenMS); QCBase::SpectraMap (OpenMS); SpectraMerger (OpenMS); SpectraSTSimilarityScore (OpenMS); SpectraTreeTab (OpenMS); Spectrum (OpenMS::Interfaces); SpectrumAccessOpenMS (OpenMS); SpectrumAccessOpenMSCached (OpenMS); SpectrumAccessOpenMSInMemory (OpenMS); SpectrumAccessQuadMZTransforming (OpenMS); SpectrumAccessSqMass (OpenMS); SpectrumAccessTransforming (OpenMS); SpectrumAddition (OpenMS); SpectrumAlignment (OpenMS); SpectrumAlignmentDialog (OpenMS); SpectrumAlignmentScore (OpenMS); SpectrumAnnotator (OpenMS); SpectrumCheapDPCorr (OpenMS); SpectrumCount (OpenMS); MzMLHandler::SpectrumData (OpenMS::Internal); MzXMLHandler::SpectrumData (OpenMS::Internal); MzIdentMLDOMHandler::SpectrumIdentification (OpenMS::Internal); SpectrumIdentification (OpenMS); MzIdentMLDOMHandler::SpectrumIdentificationProtocol (OpenMS::Internal); SpectrumLookup (OpenMS); SpectrumMeta (OpenMS::Interfaces); SpectrumMetaDataLookup::SpectrumMetaData (OpenMS); SpectrumMetaDataLookup (OpenMS); SpectrumPrecursorComparator (OpenMS); SpectrumSettings (OpenMS); SpectrumSettingsVisualizer (OpenMS); SplineInterpolatedPeaks (OpenMS); SplinePackage (OpenMS); SqliteConnector (OpenMS); SqlOperationFailed (OpenMS::Exception); SqMassFile::SqMassConfig (OpenMS); SqMassFile (OpenMS); SqrtMower (OpenMS); squared_difference (KDTree); squared_difference_counted (KDTree); StablePairFinder (OpenMS); FragmentMassError::Statistics (OpenMS); PeptideAndProteinQuant::Statistics (OpenMS); PSMExplainedIonCurrent::Statistics (OpenMS); StatsCounter (OpenMS); SteinScottImproveScore (OpenMS); IdentificationDataConverter::StepOptCompare (OpenMS); StopWatch (OpenMS); FuzzyStringComparator::StreamElement_ (OpenMS); StreamHandler (OpenMS); LogStreamBuf::StreamStruct (OpenMS::Logger); String (OpenMS); StringDataArray (OpenMS::DataArrays); StringListUtils (OpenMS); StringManager (OpenMS::Internal); StringUtilsHelper (OpenMS); StringView (OpenMS); DBSuitability::SuitabilityData (OpenMS); LayerDataDefs::ProjectionData::Summary (OpenMS); Summary (OpenMS); SummaryStatistics (OpenMS::Math); TargetedExperiment::SummaryStatistics (OpenMS); SVMData (OpenMS); SvmTheoreticalSpectrumGenerator::SvmModelParameterSet (OpenMS); SvmTheoreticalSpectrumGenerator (OpenMS); SvmTheoreticalSpectrumGeneratorSet (OpenMS); SvmTheoreticalSpectrumGeneratorTrainer (OpenMS); SVMWrapper (OpenMS); SVOutStream (OpenMS); SwathFile (OpenMS); SwathLibraryStats (OpenMS); SwathMap (OpenSwath); SwathMapMassCorrection (OpenMS); SwathQC (OpenSwath); SwathTabWidget (OpenMS::Internal); SwathWindowLoader (OpenMS); SwathWizardBase (OpenMS); SysInfo (OpenMS)

T: TableView (OpenMS); Tagger (OpenMS); Tagging (OpenMS); TaggingVisualizer (OpenMS); MetaboTargetedAssay::TargetDecoyGroup (OpenMS); TargetedExperiment (OpenMS); TargetedExperiment (OpenSwath); TargetedSpectraExtractor (OpenMS); File::TempDir (OpenMS); File::TemporaryFiles_ (OpenMS); TextFile (OpenMS); FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern (OpenMS); TheoreticalSpectrumGenerationDialog (OpenMS); TheoreticalSpectrumGenerator (OpenMS); TheoreticalSpectrumGeneratorXLMS (OpenMS); ThresholdMower (OpenMS); TIC (OpenMS); TICFilter (OpenMS); StopWatch::TimeDiff_ (OpenMS); TMTEighteenPlexQuantitationMethod (OpenMS); TMTElevenPlexQuantitationMethod (OpenMS); TMTSixPlexQuantitationMethod (OpenMS); TMTSixteenPlexQuantitationMethod (OpenMS); TMTTenPlexQuantitationMethod (OpenMS); TOFCalibration (OpenMS); ToolDescription (OpenMS::Internal); ToolDescriptionFile (OpenMS); ToolDescriptionHandler (OpenMS::Internal); ToolDescriptionInternal (OpenMS::Internal); ToolExternalDetails (OpenMS::Internal); ToolHandler (OpenMS); ToolInfo (OpenMS); ToolsDialog (OpenMS); TOPPASBase (OpenMS); TOPPASEdge (OpenMS); TOPPASVertex::TOPPASFilenames (OpenMS); TOPPASInputFileDialog (OpenMS); TOPPASInputFileListVertex (OpenMS); TOPPASInputFilesDialog (OpenMS); TOPPASIOMappingDialog (OpenMS); TOPPASMergerVertex (OpenMS); TOPPASOutputFileListVertex (OpenMS); TOPPASOutputFilesDialog (OpenMS); TOPPASResource (OpenMS); TOPPASResources (OpenMS); TOPPASScene (OpenMS); TOPPASSplitterVertex (OpenMS); TOPPASToolConfigDialog (OpenMS); TOPPASToolVertex (OpenMS); TOPPASTreeView (OpenMS); TOPPASVertex (OpenMS); TOPPASVertexNameDialog (OpenMS); TOPPASWidget (OpenMS); TOPPBase (OpenMS); TOPPFLASHDeconv; TOPPGNPSExport; TOPPOpenSwathBase (OpenMS); TOPPASScene::TOPPProcess (OpenMS); TOPPViewBase (OpenMS); TOPPViewMenu (OpenMS); TOPPViewOpenDialog (OpenMS); TOPPViewPrefDialog (OpenMS::Internal); PrecursorIonSelection::TotalScoreMore (OpenMS); TraceFitter (OpenMS); Param::ParamIterator::TraceInfo (OpenMS); TraMLFile (OpenMS); TraMLHandler (OpenMS::Internal); TraMLProduct (OpenMS::TargetedExperimentHelper); TraMLValidator (OpenMS::Internal); IDDecoyProbability::Transformation_ (OpenMS); TransformationDescription (OpenMS); TransformationModel (OpenMS); TransformationModelBSpline (OpenMS); TransformationModelInterpolated (OpenMS); TransformationModelLinear (OpenMS); TransformationModelLowess (OpenMS); TransformationDescription::TransformationStatistics (OpenMS); TransformationXMLFile (OpenMS); TransitionGroupOpenMS (OpenMS); TransitionHelper (OpenSwath); TransitionPQPFile (OpenMS); TransitionTSVFile (OpenMS); IsotopeWaveletTransform::TransSpectrum (OpenMS); TreeView (OpenMS); TriqlerFile (OpenMS); TriqlerFile::TriqlerLine_ (OpenMS); TransitionTSVFile::TSVTransition (OpenMS); TVControllerBase (OpenMS); TVDIATreeTabController (OpenMS); TVIdentificationViewController (OpenMS); TVSpectraViewController (OpenMS); TVToolDiscovery (OpenMS); TwoDOptimization::TwoDOptFunctor (OpenMS); TwoDOptimization (OpenMS)

V: ValueTrait (OpenMS); PSLPFormulation::VariableIndexLess (OpenMS); VecLowPrecision (OpenMS); VersionInfo::VersionDetails (OpenMS); VersionInfo (OpenMS); TOPPASVertex::VertexRoundPackage (OpenMS)

W: Weights (OpenMS::ims); WeightWrapper (OpenMS); InclusionExclusionList::WindowDistance_ (OpenMS); WindowMower (OpenMS); WizardGUILock (OpenMS::Internal); WrongParameterType (OpenMS::Exception)

Z: ZhangSimilarityScore (OpenMS); ZlibCompression (OpenMS)

_: _Alloc_base (KDTree); _Base_iterator (KDTree); _Bracket_accessor (KDTree); _Iterator (KDTree); _Node (KDTree); _Node_base (KDTree); _Node_compare (KDTree); _Region (KDTree)