Meta data for the association between an identified molecule (e.g. peptide) and a parent sequence (e.g. protein). More...

#include <OpenMS/METADATA/ID/ParentMatch.h>

Inheritance diagram for ParentMatch:

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Collaboration diagram for ParentMatch:

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Public Member Functions
	ParentMatch (Size start_pos=UNKNOWN_POSITION, Size end_pos=UNKNOWN_POSITION, String left_neighbor=UNKNOWN_NEIGHBOR, String right_neighbor=UNKNOWN_NEIGHBOR)

bool	operator< (const ParentMatch &other) const

bool	operator== (const ParentMatch &other) const

bool	hasValidPositions (Size molecule_length=0, Size parent_length=0) const

Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...

void	swap (MetaInfoInterface &rhs)
	Swap contents. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (const String &name, const DataValue &default_value) const
	Returns the value corresponding to a string, or a default value (e.g.: DataValue::EMPTY) if not found. More...

const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to the index, or DataValue::EMPTY if not found. More...

DataValue	getMetaValue (UInt index, const DataValue &default_value) const
	Returns the value corresponding to the index, or a default value (e.g.: DataValue::EMPTY) if not found. More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Public Attributes
Size	start_pos

Size	end_pos

String	left_neighbor

String	right_neighbor

Static Public Attributes
static constexpr Size	UNKNOWN_POSITION = Size(-1)

static constexpr char	UNKNOWN_NEIGHBOR = 'X'

static constexpr char	LEFT_TERMINUS = '['

static constexpr char	RIGHT_TERMINUS = ']'

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Detailed Description

Meta data for the association between an identified molecule (e.g. peptide) and a parent sequence (e.g. protein).

Constructor & Destructor Documentation

◆ ParentMatch()

ParentMatch	(	Size	start_pos = `UNKNOWN_POSITION`,
		Size	end_pos = `UNKNOWN_POSITION`,
		String	left_neighbor = `UNKNOWN_NEIGHBOR`,
		String	right_neighbor = `UNKNOWN_NEIGHBOR`
	)

inlineexplicit

Member Function Documentation

◆ hasValidPositions()

bool hasValidPositions	(	Size	molecule_length = `0`,
		Size	parent_length = `0`
	)		const

inline

References ParentMatch::end_pos, ParentMatch::start_pos, and ParentMatch::UNKNOWN_POSITION.

◆ operator<()

bool operator< ( const ParentMatch & other ) const

inline

References ParentMatch::end_pos, and ParentMatch::start_pos.

◆ operator==()

bool operator== ( const ParentMatch & other ) const

inline

References ParentMatch::end_pos, and ParentMatch::start_pos.

Member Data Documentation

◆ end_pos

Size end_pos

Referenced by ParentMatch::hasValidPositions(), ParentMatch::operator<(), and ParentMatch::operator==().

◆ left_neighbor

String left_neighbor

◆ LEFT_TERMINUS

constexpr char LEFT_TERMINUS = '['

staticconstexpr

◆ right_neighbor

String right_neighbor

◆ RIGHT_TERMINUS

constexpr char RIGHT_TERMINUS = ']'

staticconstexpr

◆ start_pos

Size start_pos

Referenced by ParentMatch::hasValidPositions(), ParentMatch::operator<(), and ParentMatch::operator==().

◆ UNKNOWN_NEIGHBOR

constexpr char UNKNOWN_NEIGHBOR = 'X'

staticconstexpr

◆ UNKNOWN_POSITION

constexpr Size UNKNOWN_POSITION = Size(-1)

staticconstexpr

Referenced by ParentMatch::hasValidPositions().

Public Member Functions

Public Attributes

Static Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ ParentMatch()

Member Function Documentation

◆ hasValidPositions()

◆ operator<()

◆ operator==()

Member Data Documentation

◆ end_pos

◆ left_neighbor

◆ LEFT_TERMINUS

◆ right_neighbor

◆ RIGHT_TERMINUS

◆ start_pos

◆ UNKNOWN_NEIGHBOR

◆ UNKNOWN_POSITION