SvmTheoreticalSpectrumGeneratorSet Class Reference

Loads SvmTheoreticalSpectrumGenerator instances for different charges. More...

#include <OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h>

Collaboration diagram for SvmTheoreticalSpectrumGeneratorSet:

Constructors and Destructors
std::map< Size, SvmTheoreticalSpectrumGenerator >	simulators_
	SvmTheoreticalSpectrumGeneratorSet ()
	Default constructor. More...
	SvmTheoreticalSpectrumGeneratorSet (const SvmTheoreticalSpectrumGeneratorSet &source)
	Copy constructor. More...
virtual	~SvmTheoreticalSpectrumGeneratorSet ()
	Destructor. More...
SvmTheoreticalSpectrumGeneratorSet &	operator= (const SvmTheoreticalSpectrumGeneratorSet &tsg)
	Assignment operator. More...
void	simulate (PeakSpectrum &spectrum, const AASequence &peptide, boost::random::mt19937_64 &rng, Size precursor_charge)
	Generate the MS/MS according to the model for the given precursor_charge. More...
void	load (String)
	Load a trained Svm and Prob. models. More...
void	getSupportedCharges (std::set< Size > &charges)
	Return precursor charges for which a model is contained in the set. More...
SvmTheoreticalSpectrumGenerator &	getSvmModel (Size)
	return a modifiable reference to the SVM model with given charge. If charge is not supported throw exception More...

Detailed Description

Loads SvmTheoreticalSpectrumGenerator instances for different charges.

The input file contains pairs of charge and svm models separated by a ":" (see share/OpenMS/SIMULATION/SvmModelSet.model)

Actually only a test model is shipped with OpenMS.
Please find trained models at: http://sourceforge.net/projects/open-ms/files/Supplementary/Simulation/.

Constructor & Destructor Documentation

SvmTheoreticalSpectrumGeneratorSet() [1/2]

SvmTheoreticalSpectrumGeneratorSet

(

)

Default constructor.

SvmTheoreticalSpectrumGeneratorSet() [2/2]

SvmTheoreticalSpectrumGeneratorSet

(

const SvmTheoreticalSpectrumGeneratorSet &

source

)

Copy constructor.

~SvmTheoreticalSpectrumGeneratorSet()

virtual ~SvmTheoreticalSpectrumGeneratorSet ( )

virtual

Destructor.

Member Function Documentation

getSupportedCharges()

void getSupportedCharges

(

std::set< Size > &

charges

)

Return precursor charges for which a model is contained in the set.

getSvmModel()

SvmTheoreticalSpectrumGenerator& getSvmModel

(

Size

)

return a modifiable reference to the SVM model with given charge. If charge is not supported throw exception

load()

void load

(

String

)

Load a trained Svm and Prob. models.

operator=()

SvmTheoreticalSpectrumGeneratorSet& operator=

(

const SvmTheoreticalSpectrumGeneratorSet &

tsg

)

Assignment operator.

simulate()

void simulate	(	PeakSpectrum &	spectrum,
		const AASequence &	peptide,
		boost::random::mt19937_64 &	rng,
		Size	precursor_charge
	)

Generate the MS/MS according to the model for the given precursor_charge.

Member Data Documentation

simulators_

std::map<Size, SvmTheoreticalSpectrumGenerator> simulators_

protected