SpectrumAccessTransforming Class Reference

An abstract base class implementing a transforming wrapper around spectrum access. More...

#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.h>

Inheritance diagram for SpectrumAccessTransforming:

Collaboration diagram for SpectrumAccessTransforming:

Public Member Functions
	SpectrumAccessTransforming (OpenSwath::SpectrumAccessPtr sptr)
	~SpectrumAccessTransforming () override=0
boost::shared_ptr< ISpectrumAccess >	lightClone () const override=0
	Light clone operator to produce a copy for concurrent read access. More...
OpenSwath::SpectrumPtr	getSpectrumById (int id) override
	Return a pointer to a spectrum at the given id. More...
OpenSwath::SpectrumMeta	getSpectrumMetaById (int id) const override
	Returns the meta information for a spectrum. More...
std::vector< std::size_t >	getSpectraByRT (double RT, double deltaRT) const override
	Return a vector of ids of spectra that are within RT +/- deltaRT. More...
size_t	getNrSpectra () const override
	Returns the number of spectra available. More...
OpenSwath::ChromatogramPtr	getChromatogramById (int id) override
	Return a pointer to a chromatogram at the given id. More...
size_t	getNrChromatograms () const override
	Returns the number of chromatograms available. More...
std::string	getChromatogramNativeID (int id) const override
	Returns the native id of the chromatogram at the given id. More...
Public Member Functions inherited from ISpectrumAccess
virtual	~ISpectrumAccess ()
	Destructor. More...

Protected Attributes
OpenSwath::SpectrumAccessPtr	sptr_

Detailed Description

An abstract base class implementing a transforming wrapper around spectrum access.

Constructor & Destructor Documentation

SpectrumAccessTransforming()

SpectrumAccessTransforming ( OpenSwath::SpectrumAccessPtr  sptr )

explicit

~SpectrumAccessTransforming()

~SpectrumAccessTransforming ( )

overridepure virtual

Member Function Documentation

getChromatogramById()

OpenSwath::ChromatogramPtr getChromatogramById ( int  id )

overridevirtual

Return a pointer to a chromatogram at the given id.

Implements ISpectrumAccess.

getChromatogramNativeID()

std::string getChromatogramNativeID ( int  id ) const

overridevirtual

Returns the native id of the chromatogram at the given id.

Implements ISpectrumAccess.

getNrChromatograms()

size_t getNrChromatograms ( ) const

overridevirtual

Returns the number of chromatograms available.

Implements ISpectrumAccess.

getNrSpectra()

size_t getNrSpectra ( ) const

overridevirtual

Returns the number of spectra available.

Implements ISpectrumAccess.

getSpectraByRT()

std::vector<std::size_t> getSpectraByRT ( double  RT, double  deltaRT  ) const

overridevirtual

Return a vector of ids of spectra that are within RT +/- deltaRT.

Implements ISpectrumAccess.

getSpectrumById()

OpenSwath::SpectrumPtr getSpectrumById ( int  id )

overridevirtual

Return a pointer to a spectrum at the given id.

Implements ISpectrumAccess.

getSpectrumMetaById()

OpenSwath::SpectrumMeta getSpectrumMetaById ( int  id ) const

overridevirtual

Returns the meta information for a spectrum.

Implements ISpectrumAccess.

lightClone()

boost::shared_ptr<ISpectrumAccess> lightClone ( ) const

overridepure virtual

Light clone operator to produce a copy for concurrent read access.

This function guarantees to produce a copy of the underlying object that provides thread-safe concurrent read access to the underlying data. It should be implemented with minimal copy-overhead to make this operation as fast as possible.

To use this function, each thread should call this function to produce an individual copy on which it can operate.

Implements ISpectrumAccess.

Implemented in SpectrumAccessQuadMZTransforming.

Member Data Documentation

sptr_

OpenSwath::SpectrumAccessPtr sptr_

protected