OpenMS
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#include <OpenMS/config.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/FORMAT/MzIdentMLFile.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/ANALYSIS/ID/PercolatorFeatureSetHelper.h>
#include <QtCore/QFile>
#include <QtCore/QDir>
#include <QtCore/QProcess>
#include <iostream>
#include <cmath>
#include <string>