OpenMS
ChromatogramExtractor Member List

This is the complete list of members for ChromatogramExtractor, including all inherited members.

CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() constProgressLogger
extract_id_(TransitionExpT &transition_exp_used, const String &id, int &prec_charge)ChromatogramExtractorprivatestatic
extract_value_bartlett(const SpectrumT &input, const double mz, Size &peak_idx, double &integrated_intensity, const double extract_window, const bool ppm)ChromatogramExtractorinline
extract_value_tophat(const SpectrumT &input, const double mz, Size &peak_idx, double &integrated_intensity, const double extract_window, const bool ppm)ChromatogramExtractorinline
extractChromatograms(const ExperimentT &input, ExperimentT &output, OpenMS::TargetedExperiment &transition_exp, double mz_extraction_window, bool ppm, TransformationDescription trafo, double rt_extraction_window, const String &filter)ChromatogramExtractorinline
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, const std::vector< ExtractionCoordinates > &extraction_coordinates, double mz_extraction_window, bool ppm, const String &filter)ChromatogramExtractorinline
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, const std::vector< ExtractionCoordinates > &extraction_coordinates, double mz_extraction_window, bool ppm, double im_extraction_window, const String &filter)ChromatogramExtractorinline
ExtractionCoordinates typedefChromatogramExtractor
getFilterNr_(const String &filter)ChromatogramExtractorprivate
getLogType() constProgressLogger
GUI enum valueProgressLogger
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
outsideExtractionWindow_(const ReactionMonitoringTransition &transition, double current_rt, const TransformationDescription &trafo, double rt_extraction_window)ChromatogramExtractorprivate
PeptideRTMap_ChromatogramExtractorprivate
populatePeptideRTMap_(OpenMS::TargetedExperiment &transition_exp, double rt_extraction_window)ChromatogramExtractorprivate
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenMS::TargetedExperiment &transition_exp, const double rt_extraction_window, const bool ms1=false, const int ms1_isotopes=0)ChromatogramExtractorstatic
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, const OpenSwath::LightTargetedExperiment &transition_exp_used, const double rt_extraction_window, const bool ms1=false, const int ms1_isotopes=0)ChromatogramExtractorstatic
prepareSpectra_(SpectrumSettingsT &settings, std::vector< ChromatogramT > &chromatograms, OpenMS::TargetedExperiment &transition_exp)ChromatogramExtractorinlineprivate
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
return_chromatogram(const std::vector< OpenSwath::ChromatogramPtr > &chromatograms, const std::vector< ChromatogramExtractor::ExtractionCoordinates > &coordinates, TransitionExpT &transition_exp_used, SpectrumSettings settings, std::vector< OpenMS::MSChromatogram > &output_chromatograms, bool ms1, double im_extraction_width=0.0)ChromatogramExtractorinlinestatic
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
type_ProgressLoggermutableprotected
~ProgressLogger()ProgressLoggervirtual