OpenMS
ConfidenceScoring Member List

This is the complete list of members for ConfidenceScoring, including all inherited members.

chooseDecoys_()ConfidenceScoringprotected
CMD enum valueProgressLogger
ConfidenceScoring(bool test_mode_=false)ConfidenceScoringexplicit
current_logger_ProgressLoggermutableprotected
decoy_index_ConfidenceScoringprotected
endProgress() constProgressLogger
getAssayRT_(const TargetedExperiment::Peptide &assay)ConfidenceScoringprotected
getLogType() constProgressLogger
glm_ConfidenceScoringprotected
GUI enum valueProgressLogger
initialize(const TargetedExperiment &library, const Size n_decoys, const Size n_transitions, const TransformationDescription &rt_trafo)ConfidenceScoringinline
initializeGlm(double intercept, double rt_coef, double int_coef)ConfidenceScoringinline
last_invoke_ProgressLoggermutableprotected
library_ConfidenceScoringprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
manhattanDist_(DoubleList x, DoubleList y)ConfidenceScoringprotected
n_decoys_ConfidenceScoringprotected
n_transitions_ConfidenceScoringprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
rt_norm_ConfidenceScoringprotected
rt_trafo_ConfidenceScoringprotected
scoreAssay_(const TargetedExperiment::Peptide &assay, double feature_rt, DoubleList &feature_intensities, const std::set< String > &transition_ids=std::set< String >())ConfidenceScoringprotected
scoreFeature_(Feature &feature)ConfidenceScoringprotected
scoreMap(FeatureMap &features)ConfidenceScoringinline
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
shuffler_ConfidenceScoringprotected
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
transition_map_ConfidenceScoringprotected
type_ProgressLoggermutableprotected
~ConfidenceScoring() overrideConfidenceScoringinline
~ProgressLogger()ProgressLoggervirtual