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FASTAFile Member List
This is the complete list of members for
FASTAFile
, including all inherited members.
atEnd
()
FASTAFile
CMD
enum value
ProgressLogger
current_logger_
ProgressLogger
mutable
protected
description_
FASTAFile
protected
endProgress
() const
ProgressLogger
entries_read_
FASTAFile
protected
FASTAFile
()=default
FASTAFile
fileSize_
FASTAFile
protected
getLogType
() const
ProgressLogger
GUI
enum value
ProgressLogger
id_
FASTAFile
protected
infile_
FASTAFile
protected
last_invoke_
ProgressLogger
mutable
protected
load
(const String &filename, std::vector< FASTAEntry > &data) const
FASTAFile
LogType
enum name
ProgressLogger
logTypeToFactoryName_
(LogType type)
ProgressLogger
protected
static
nextProgress
() const
ProgressLogger
NONE
enum value
ProgressLogger
operator=
(const ProgressLogger &other)
ProgressLogger
outfile_
FASTAFile
protected
position
()
FASTAFile
ProgressLogger
()
ProgressLogger
ProgressLogger
(const ProgressLogger &other)
ProgressLogger
readEntry_
(std::string &id, std::string &description, std::string &seq)
FASTAFile
protected
readNext
(FASTAEntry &protein)
FASTAFile
readStart
(const String &filename)
FASTAFile
recursion_depth_
ProgressLogger
protected
static
seq_
FASTAFile
protected
setLogType
(LogType type) const
ProgressLogger
setPosition
(const std::streampos &pos)
FASTAFile
setProgress
(SignedSize value) const
ProgressLogger
startProgress
(SignedSize begin, SignedSize end, const String &label) const
ProgressLogger
store
(const String &filename, const std::vector< FASTAEntry > &data) const
FASTAFile
type_
ProgressLogger
mutable
protected
writeEnd
()
FASTAFile
writeNext
(const FASTAEntry &protein)
FASTAFile
writeStart
(const String &filename)
FASTAFile
~FASTAFile
() override=default
FASTAFile
~ProgressLogger
()
ProgressLogger
virtual
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