OpenMS
FeatureFinderMultiplexAlgorithm Member List

This is the complete list of members for FeatureFinderMultiplexAlgorithm, including all inherited members.

centroided_FeatureFinderMultiplexAlgorithmprotected
charge_max_FeatureFinderMultiplexAlgorithmprotected
charge_min_FeatureFinderMultiplexAlgorithmprotected
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
consensus_map_FeatureFinderMultiplexAlgorithmprotected
correctPeptideIntensities_(const MultiplexIsotopicPeakPattern &pattern, std::map< size_t, SplinePackage > &spline_chromatograms, const std::vector< double > &rt_peptide, std::vector< double > &intensity_peptide) constFeatureFinderMultiplexAlgorithmprotected
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
determinePeptideIntensitiesCentroided_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteCentroided > &satellites)FeatureFinderMultiplexAlgorithmprotected
determinePeptideIntensitiesProfile_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites)FeatureFinderMultiplexAlgorithmprotected
endProgress() constProgressLogger
error_name_DefaultParamHandlerprotected
exp_blacklist_FeatureFinderMultiplexAlgorithmprotected
exp_centroid_FeatureFinderMultiplexAlgorithmprotected
exp_profile_FeatureFinderMultiplexAlgorithmprotected
feature_map_FeatureFinderMultiplexAlgorithmprotected
FeatureFinderMultiplexAlgorithm()FeatureFinderMultiplexAlgorithm
generateMapsCentroided_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, std::vector< std::map< int, GridBasedCluster > > &cluster_results)FeatureFinderMultiplexAlgorithmprotected
generateMapsProfile_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, const std::vector< std::map< int, GridBasedCluster > > &cluster_results)FeatureFinderMultiplexAlgorithmprotected
generatePeakPatterns_(int charge_min, int charge_max, int peaks_per_peptide_max, const std::vector< MultiplexDeltaMasses > &mass_pattern_list)FeatureFinderMultiplexAlgorithmprotected
getBlacklist()FeatureFinderMultiplexAlgorithm
getConsensusMap()FeatureFinderMultiplexAlgorithm
getDefaults() constDefaultParamHandler
getFeatureMap()FeatureFinderMultiplexAlgorithm
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
isotopes_per_peptide_max_FeatureFinderMultiplexAlgorithmprotected
isotopes_per_peptide_min_FeatureFinderMultiplexAlgorithmprotected
label_mass_shift_FeatureFinderMultiplexAlgorithmprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
nextProgress() constProgressLogger
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
prog_log_FeatureFinderMultiplexAlgorithmprotected
progress_FeatureFinderMultiplexAlgorithmprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
run(MSExperiment &exp, bool progress)FeatureFinderMultiplexAlgorithm
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLoggervirtual