FeatureFindingMetabo Member List

This is the complete list of members for FeatureFindingMetabo, including all inherited members.

charge_lower_bound_	FeatureFindingMetabo	private
charge_upper_bound_	FeatureFindingMetabo	private
check_defaults_	DefaultParamHandler	protected
chrom_fwhm_	FeatureFindingMetabo	private
CMD enum value	ProgressLogger
computeAveragineSimScore_(const std::vector< double > &intensities, const double &molecular_weight) const	FeatureFindingMetabo	private
computeCosineSim_(const std::vector< double > &, const std::vector< double > &) const	FeatureFindingMetabo	private
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
elements_	FeatureFindingMetabo	private
elementsFromString_(const std::string &elements_string) const	FeatureFindingMetabo	private
enable_RT_filtering_	FeatureFindingMetabo	private
endProgress() const	ProgressLogger
error_name_	DefaultParamHandler	protected
FeatureFindingMetabo()	FeatureFindingMetabo
findLocalFeatures_(const std::vector< const MassTrace * > &candidates, double total_intensity, std::vector< FeatureHypothesis > &output_hypotheses) const	FeatureFindingMetabo	private
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
getTheoreticIsotopicMassWindow_(const std::vector< Element const * > &alphabet, int peakOffset) const	FeatureFindingMetabo	private
GUI enum value	ProgressLogger
isLegalIsotopePattern_(const FeatureHypothesis &feat_hypo) const	FeatureFindingMetabo	private
isotope_filt_svm_	FeatureFindingMetabo	private
isotope_filtering_model_	FeatureFindingMetabo	private
last_invoke_	ProgressLogger	mutableprotected
loadIsotopeModel_(const String &)	FeatureFindingMetabo	private
local_mz_range_	FeatureFindingMetabo	private
local_rt_range_	FeatureFindingMetabo	private
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
remove_single_traces_	FeatureFindingMetabo	private
report_chromatograms_	FeatureFindingMetabo	private
report_convex_hulls_	FeatureFindingMetabo	private
report_summed_ints_	FeatureFindingMetabo	private
run(std::vector< MassTrace > &input_mtraces, FeatureMap &output_featmap, std::vector< std::vector< OpenMS::MSChromatogram > > &output_chromatograms)	FeatureFindingMetabo
scoreMZ_(const MassTrace &, const MassTrace &, Size isotopic_position, Size charge, Range isotope_window) const	FeatureFindingMetabo	private
scoreMZByExpectedMean_(Size iso_pos, Size charge, const double diff_mz, double mt_variances) const	FeatureFindingMetabo	private
scoreMZByExpectedRange_(Size charge, const double diff_mz, double mt_variances, Range isotope_window) const	FeatureFindingMetabo	private
scoreRT_(const MassTrace &, const MassTrace &) const	FeatureFindingMetabo	private
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
svm_feat_centers_	FeatureFindingMetabo	private
svm_feat_scales_	FeatureFindingMetabo	private
type_	ProgressLogger	mutableprotected
updateMembers_() override	FeatureFindingMetabo	protectedvirtual
use_mz_scoring_by_element_range_	FeatureFindingMetabo	private
use_mz_scoring_C13_	FeatureFindingMetabo	private
use_smoothed_intensities_	FeatureFindingMetabo	private
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~FeatureFindingMetabo() override	FeatureFindingMetabo
~ProgressLogger()	ProgressLogger	virtual