InclusionExclusionList Member List

This is the complete list of members for InclusionExclusionList, including all inherited members.

check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
InclusionExclusionList()	InclusionExclusionList
mergeOverlappingWindows_(WindowList &list) const	InclusionExclusionList	protected
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
WindowList typedef	InclusionExclusionList	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
writeTargets(const std::vector< FASTAFile::FASTAEntry > &fasta_entries, const String &out_path, const IntList &charges, const String &rt_model_path)	InclusionExclusionList
writeTargets(const FeatureMap &map, const String &out_path)	InclusionExclusionList
writeTargets(const std::vector< PeptideIdentification > &pep_ids, const String &out_path, const IntList &charges)	InclusionExclusionList
writeToFile_(const String &out_path, const WindowList &windows) const	InclusionExclusionList	protected
~DefaultParamHandler()	DefaultParamHandler	virtual