OpenMS
InternalCalibration Member List

This is the complete list of members for InternalCalibration, including all inherited members.

applyTransformation(std::vector< Precursor > &pcs, const MZTrafoModel &trafo)InternalCalibrationstatic
applyTransformation(PeakMap::SpectrumType &spec, const IntList &target_mslvl, const MZTrafoModel &trafo)InternalCalibrationstatic
applyTransformation(PeakMap &exp, const IntList &target_mslvl, const MZTrafoModel &trafo)InternalCalibrationstatic
applyTransformation_(PeakMap::SpectrumType &spec, const MZTrafoModel &trafo)InternalCalibrationprotectedstatic
cal_data_InternalCalibrationprivate
calibrate(PeakMap &exp, const IntList &target_mslvl, MZTrafoModel::MODELTYPE model_type, double rt_chunk, bool use_RANSAC, double post_ppm_median, double post_ppm_MAD, const String &file_models="", const String &file_models_plot="", const String &file_residuals="", const String &file_residuals_plot="", const String &rscript_executable="Rscript")InternalCalibration
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() constProgressLogger
fillCalibrants(const PeakMap &exp, const std::vector< InternalCalibration::LockMass > &ref_masses, double tol_ppm, bool lock_require_mono, bool lock_require_iso, CalibrationData &failed_lock_masses, bool verbose=true)InternalCalibration
fillCalibrants(const FeatureMap &fm, double tol_ppm)InternalCalibration
fillCalibrants(const std::vector< PeptideIdentification > &pep_ids, double tol_ppm)InternalCalibration
fillID_(const PeptideIdentification &pep_id, const double tol_ppm, CalibrantStats_ &stats)InternalCalibrationprotected
fillIDs_(const std::vector< PeptideIdentification > &pep_ids, const double tol_ppm, CalibrantStats_ &stats)InternalCalibrationprotected
getCalibrationPoints() constInternalCalibration
getLogType() constProgressLogger
GUI enum valueProgressLogger
InternalCalibration()InternalCalibration
isDecalibrated_(const PeptideIdentification &pep_id, const double mz_obs, const double tol_ppm, CalibrantStats_ &stats, double &mz_ref)InternalCalibrationprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
type_ProgressLoggermutableprotected
~InternalCalibration() overrideInternalCalibrationinline
~ProgressLogger()ProgressLoggervirtual