| alpha_ | MessagePasserFactory< Label > | private |
| beta_ | MessagePasserFactory< Label > | private |
| chgLLhoods | MessagePasserFactory< Label > | private |
| createBFPeptideProbabilisticAdderFactor(const std::set< Label > &parentProteinIDs, Label nId, const std::vector< evergreen::TableDependency< Label > > &deps) | MessagePasserFactory< Label > | |
| createChargeFactor(Label repId, Label chargeId, int chg) | MessagePasserFactory< Label > | |
| createPeptideEvidenceFactor(Label id, double prob) | MessagePasserFactory< Label > | |
| createPeptideProbabilisticAdderFactor(const std::set< Label > &parentProteinIDs, Label nId) | MessagePasserFactory< Label > | |
| createPeptideProbabilisticAdderFactor(const std::vector< Label > &parentProteinIDs, Label nId) | MessagePasserFactory< Label > | |
| createProteinFactor(Label id, int nrMissingPeps=0) | MessagePasserFactory< Label > | |
| createProteinFactor(Label id, double prior, int nrMissingPeps=0) | MessagePasserFactory< Label > | |
| createRegularizingSumEvidenceFactor(size_t nrParents, Label nId, Label pepId) | MessagePasserFactory< Label > | |
| createReplicateFactor(Label seqId, Label repId) | MessagePasserFactory< Label > | |
| createSumEvidenceFactor(size_t nrParents, Label nId, Label pepId) | MessagePasserFactory< Label > | |
| createSumFactor(size_t nrParents, Label nId) | MessagePasserFactory< Label > | |
| fillVectorsOfMessagePassers(const std::vector< Label > &protIDs, const std::vector< std::vector< Label >> &parentsOfPeps, const std::vector< double > &pepEvidences, evergreen::InferenceGraphBuilder< Label > &igb) | MessagePasserFactory< Label > | |
| gamma_ | MessagePasserFactory< Label > | private |
| MessagePasserFactory(double alpha, double beta, double gamma, double p, double pep_prior) | MessagePasserFactory< Label > | |
| notConditionalGivenSum(unsigned long summ) | MessagePasserFactory< Label > | inlineprivate |
| p_ | MessagePasserFactory< Label > | private |
| pepPrior_ | MessagePasserFactory< Label > | private |
1.9.1 
