OpenMS
TraMLHandler Member List

This is the complete list of members for TraMLHandler, including all inherited members.

ActionMode enum nameXMLHandler
actual_compound_TraMLHandlerprotected
actual_configuration_TraMLHandlerprotected
actual_contact_TraMLHandlerprotected
actual_instrument_TraMLHandlerprotected
actual_intermediate_products_TraMLHandlerprotected
actual_interpretation_TraMLHandlerprotected
actual_peptide_TraMLHandlerprotected
actual_prediction_TraMLHandlerprotected
actual_product_TraMLHandlerprotected
actual_protein_TraMLHandlerprotected
actual_publication_TraMLHandlerprotected
actual_rt_TraMLHandlerprotected
actual_software_TraMLHandlerprotected
actual_sourcefile_TraMLHandlerprotected
actual_target_TraMLHandlerprotected
actual_transition_TraMLHandlerprotected
actual_validation_TraMLHandlerprotected
asBool_(const String &in) constXMLHandlerinlineprotected
asDateTime_(String date_string) constXMLHandlerinlineprotected
asDouble_(const String &in) constXMLHandlerinlineprotected
asFloat_(const String &in) constXMLHandlerinlineprotected
asInt_(const String &in) constXMLHandlerinlineprotected
asInt_(const XMLCh *in) constXMLHandlerinlineprotected
asUInt_(const String &in) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
cexp_TraMLHandlerprotected
characters(const XMLCh *const chars, const XMLSize_t length) overrideTraMLHandler
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids) constXMLHandler
ConfigurationListType typedefTraMLHandler
cv_TraMLHandlerprotected
cv_terms_XMLHandlerprotected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideTraMLHandler
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
exp_TraMLHandlerprotected
expectList_(const String &str) constXMLHandlerinlineprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
fromXSDString(const String &type, const String &value)XMLHandlerinlinestatic
getChildWithName_(const String &parent_accession, const String &name) constTraMLHandlerprotected
getLoadDetail() constXMLHandlervirtual
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const CVTerm &cv_term)TraMLHandlerprotected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value)TraMLHandlerprotected
LD_ALLDATA enum valueXMLHandler
LD_COUNTS_WITHOPTIONS enum valueXMLHandler
LD_RAWCOUNTS enum valueXMLHandler
LOAD enum valueXMLHandler
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandler
logger_TraMLHandlerprotected
open_tags_XMLHandlerprotected
operator=(const TraMLHandler &rhs)=deleteTraMLHandler
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
ProductListType typedefTraMLHandler
reset()XMLHandler
setLoadDetail(const LOADDETAIL d)XMLHandlervirtual
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideTraMLHandler
STORE enum valueXMLHandler
tag_TraMLHandlerprotected
TraMLHandler()=deleteTraMLHandler
TraMLHandler(const TraMLHandler &rhs)=deleteTraMLHandler
TraMLHandler(const TargetedExperiment &exp, const String &filename, const String &version, const ProgressLogger &logger)TraMLHandler
TraMLHandler(TargetedExperiment &exp, const String &filename, const String &version, const ProgressLogger &logger)TraMLHandler
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writeConfiguration_(std::ostream &os, const std::vector< ReactionMonitoringTransition::Configuration >::const_iterator &cit) constTraMLHandlerprotected
writeCVList_(std::ostream &os, const std::map< String, std::vector< CVTerm >> &cv_terms, UInt indent) constTraMLHandlerprotected
writeCVParams_(std::ostream &os, const CVTermList &cv_terms, UInt indent) constTraMLHandlerprotected
writeCVParams_(std::ostream &os, const CVTermListInterface &cv_terms, UInt indent) constTraMLHandlerprotected
writeProduct_(std::ostream &os, const std::vector< ReactionMonitoringTransition::Product >::const_iterator &prod_it) constTraMLHandlerprotected
writeRetentionTime_(std::ostream &os, const TargetedExperimentHelper::RetentionTime &rt) constTraMLHandlerprotected
writeTarget_(std::ostream &os, const std::vector< IncludeExcludeTarget >::const_iterator &it) constTraMLHandlerprotected
writeTo(std::ostream &os) overrideTraMLHandlervirtual
writeUserParam_(std::ostream &os, const MetaInfoInterface &meta, UInt indent) constTraMLHandlerprotected
OpenMS::Internal::XMLHandler::writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeUserParams_(std::ostream &os, const std::vector< MetaInfoInterface > &meta, UInt indent) constTraMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLHandler(const String &filename, const String &version)XMLHandler
XMLHandler()XMLHandlerprivate
~TraMLHandler() overrideTraMLHandler
~XMLHandler() overrideXMLHandler