OpenMS
MapAlignmentAlgorithmTreeGuided Member List

This is the complete list of members for MapAlignmentAlgorithmTreeGuided, including all inherited members.

addPeptideSequences_(const std::vector< PeptideIdentification > &peptides, SeqAndRTList &peptide_rts, std::vector< double > &map_range, double feature_rt)MapAlignmentAlgorithmTreeGuidedprotectedstatic
align(std::vector< FeatureMap > &data, std::vector< TransformationDescription > &transformations)MapAlignmentAlgorithmTreeGuided
align_algorithm_MapAlignmentAlgorithmTreeGuidedprotected
buildTree(std::vector< FeatureMap > &feature_maps, std::vector< BinaryTreeNode > &tree, std::vector< std::vector< double >> &maps_ranges)MapAlignmentAlgorithmTreeGuidedstatic
check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
computeTrafosByOriginalRT(std::vector< FeatureMap > &feature_maps, FeatureMap &map_transformed, std::vector< TransformationDescription > &transformations, const std::vector< Size > &trafo_order)MapAlignmentAlgorithmTreeGuided
computeTransformedFeatureMaps(std::vector< FeatureMap > &feature_maps, const std::vector< TransformationDescription > &transformations)MapAlignmentAlgorithmTreeGuidedstatic
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress() constProgressLogger
error_name_DefaultParamHandlerprotected
extractSeqAndRt_(const std::vector< FeatureMap > &feature_maps, std::vector< SeqAndRTList > &maps_seq_and_rt, std::vector< std::vector< double >> &maps_ranges)MapAlignmentAlgorithmTreeGuidedprotectedstatic
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MapAlignmentAlgorithmTreeGuided()MapAlignmentAlgorithmTreeGuided
MapAlignmentAlgorithmTreeGuided(const MapAlignmentAlgorithmTreeGuided &)MapAlignmentAlgorithmTreeGuidedprivate
model_param_MapAlignmentAlgorithmTreeGuidedprotected
model_type_MapAlignmentAlgorithmTreeGuidedprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const MapAlignmentAlgorithmTreeGuided &)MapAlignmentAlgorithmTreeGuidedprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
SeqAndRTList typedefMapAlignmentAlgorithmTreeGuidedprotected
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
treeGuidedAlignment(const std::vector< BinaryTreeNode > &tree, std::vector< FeatureMap > &feature_maps_transformed, std::vector< std::vector< double >> &maps_ranges, FeatureMap &map_transformed, std::vector< Size > &trafo_order)MapAlignmentAlgorithmTreeGuided
type_ProgressLoggermutableprotected
updateMembers_() overrideMapAlignmentAlgorithmTreeGuidedprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~MapAlignmentAlgorithmTreeGuided() overrideMapAlignmentAlgorithmTreeGuided
~ProgressLogger()ProgressLoggervirtual