OpenMS
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This is the complete list of members for MetaboTargetedAssay, including all inherited members.
buildAmbiguityGroup(const std::vector< MetaboTargetedAssay > &v_mta, const double &ar_mz_tol, const double &ar_rt_tol, const String &ar_mz_tol_unit_res, size_t in_files_size) | MetaboTargetedAssay | static |
compound_adduct | MetaboTargetedAssay | |
compound_file | MetaboTargetedAssay | |
compound_name | MetaboTargetedAssay | |
compound_rt | MetaboTargetedAssay | |
extractMetaboTargetedAssay(const MSExperiment &spectra, const FeatureMapping::FeatureToMs2Indices &feature_ms2_index, const double &precursor_rt_tol, const double &precursor_mz_distance, const double &cosine_sim_threshold, const double &transition_threshold, const double &min_fragment_mz, const double &max_fragment_mz, const bool &method_consensus_spectrum, const bool &exclude_ms2_precursor, const unsigned int &file_counter) | MetaboTargetedAssay | static |
extractMetaboTargetedAssayFragmentAnnotation(const std::vector< CompoundTargetDecoyPair > &v_cmp_spec, const double &transition_threshold, const double &min_fragment_mz, const double &max_fragment_mz, const bool &use_exact_mass, const bool &exclude_ms2_precursor, const unsigned int &file_counter) | MetaboTargetedAssay | static |
filterBasedOnMolFormAdductOccurrence_(std::vector< MetaboTargetedAssay > &mta) | MetaboTargetedAssay | protectedstatic |
filterBasedOnTotalOccurrence_(std::vector< MetaboTargetedAssay > &mta, double total_occurrence_filter, size_t in_files_size) | MetaboTargetedAssay | protectedstatic |
getChargeFromAdduct_(const String &adduct) | MetaboTargetedAssay | protectedstatic |
intensityLess_(const Peak1D &a, const Peak1D &b) | MetaboTargetedAssay | protectedstatic |
molecular_formula | MetaboTargetedAssay | |
noise_threshold_constant_ | MetaboTargetedAssay | protectedstatic |
pairCompoundWithAnnotatedSpectra(const std::vector< SiriusMSFile::CompoundInfo > &v_cmpinfo, const std::vector< MSSpectrum > &annotated_spectra) | MetaboTargetedAssay | static |
pairCompoundWithAnnotatedTDSpectraPairs(const std::vector< SiriusMSFile::CompoundInfo > &v_cmpinfo, const std::vector< SiriusFragmentAnnotation::SiriusTargetDecoySpectra > &annotated_spectra) | MetaboTargetedAssay | static |
potential_cmp | MetaboTargetedAssay | |
potential_rmts | MetaboTargetedAssay | |
precursor_int | MetaboTargetedAssay | |
precursor_mz | MetaboTargetedAssay | |
resolveAmbiguityGroup(std::unordered_map< UInt64, std::vector< MetaboTargetedAssay > > &map_mta_filter, const double &total_occurrence_filter, size_t in_files_size) | MetaboTargetedAssay | static |
sortByPrecursorInt(std::vector< MetaboTargetedAssay > &vec_mta) | MetaboTargetedAssay | protectedstatic |
transition_quality_score | MetaboTargetedAssay |