OpenMS
MetaboliteSpectralMatching Member List

This is the complete list of members for MetaboliteSpectralMatching, including all inherited members.

check_defaults_DefaultParamHandlerprotected
CMD enum valueProgressLogger
computeHyperScore(double fragment_mass_error, bool fragment_mass_tolerance_unit_ppm, const MSSpectrum &exp_spectrum, const MSSpectrum &db_spectrum, double mz_lower_bound=0.0)MetaboliteSpectralMatchingstatic
computeHyperScore(double fragment_mass_error, bool fragment_mass_tolerance_unit_ppm, const MSSpectrum &exp_spectrum, const MSSpectrum &db_spectrum, std::vector< PeptideHit::PeakAnnotation > &annotations, double mz_lower_bound=0.0)MetaboliteSpectralMatchingstatic
computeHyperScore_(double fragment_mass_error, bool fragment_mass_tolerance_unit_ppm, const MSSpectrum &exp_spectrum, const MSSpectrum &db_spectrum, std::vector< PeptideHit::PeakAnnotation > *annotations=0, double mz_lower_bound=0.0)MetaboliteSpectralMatchingprotectedstatic
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress() constProgressLogger
error_name_DefaultParamHandlerprotected
exportMzTab_(const std::vector< SpectralMatch > &, MzTab &)MetaboliteSpectralMatchingprivate
fragment_mz_error_MetaboliteSpectralMatchingprivate
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
ion_mode_MetaboliteSpectralMatchingprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
merge_spectra_MetaboliteSpectralMatchingprivate
MetaboliteSpectralMatching()MetaboliteSpectralMatching
mz_error_unit_MetaboliteSpectralMatchingprivate
nextProgress() constProgressLogger
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
precursor_mz_error_MetaboliteSpectralMatchingprivate
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
report_mode_MetaboliteSpectralMatchingprivate
run(PeakMap &, PeakMap &, MzTab &, String &)MetaboliteSpectralMatching
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_() overrideMetaboliteSpectralMatchingprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~MetaboliteSpectralMatching() overrideMetaboliteSpectralMatching
~ProgressLogger()ProgressLoggervirtual