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ModifiedNASequenceGenerator Member List

This is the complete list of members for ModifiedNASequenceGenerator, including all inherited members.

applyAtMostOneVariableModification_(const std::set< ConstRibonucleotidePtr > &var_mods, const NASequence &seq, std::vector< NASequence > &all_modified_NASequences, bool keep_original=true)ModifiedNASequenceGeneratorprotectedstatic
applyFixedModifications(const std::set< ConstRibonucleotidePtr > &fixed_mods, NASequence &sequence)ModifiedNASequenceGeneratorstatic
applyVariableModifications(const std::set< ConstRibonucleotidePtr > &var_mods, const NASequence &seq, Size max_variable_mods_per_NASequence, std::vector< NASequence > &all_modified_NASequences, bool keep_original=true)ModifiedNASequenceGeneratorstatic
ConstRibonucleotidePtr typedefModifiedNASequenceGenerator
recurseAndGenerateVariableModifiedSequences_(const std::vector< int > &subset_indices, const std::map< int, std::vector< ConstRibonucleotidePtr >> &map_compatibility, int depth, const NASequence &current_NASequence, std::vector< NASequence > &modified_NASequences)ModifiedNASequenceGeneratorprotectedstatic