ProteinResolver Member List

This is the complete list of members for ProteinResolver, including all inherited members.

binarySearchNodes_(String &seq, std::vector< PeptideEntry > &nodes, Size start, Size end)	ProteinResolver	private
buildingISDGroups_(std::vector< ProteinEntry > &protein_nodes, std::vector< PeptideEntry > &peptide_nodes, std::vector< ISDGroup > &isd_groups)	ProteinResolver	private
buildingMSDGroups_(std::vector< MSDGroup > &msd_groups, std::vector< ISDGroup > &isd_groups)	ProteinResolver	private
check_defaults_	DefaultParamHandler	protected
clearResult()	ProteinResolver
computeIntensityOfMSD_(std::vector< MSDGroup > &msd_groups)	ProteinResolver	private
countTargetDecoy(std::vector< MSDGroup > &msd_groups, ConsensusMap &consensus)	ProteinResolver
countTargetDecoy(std::vector< MSDGroup > &msd_groups, std::vector< PeptideIdentification > &peptide_nodes)	ProteinResolver
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
findPeptideEntry_(String seq, std::vector< PeptideEntry > &nodes)	ProteinResolver	private
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getPeptideHit(const ConsensusMap &consensus, const PeptideEntry *peptide)	ProteinResolver	static
getPeptideHit(const std::vector< PeptideIdentification > &peptide_nodes, const PeptideEntry *peptide)	ProteinResolver	static
getPeptideIdentification(const ConsensusMap &consensus, const PeptideEntry *peptide)	ProteinResolver	static
getPeptideIdentification(const std::vector< PeptideIdentification > &peptide_nodes, const PeptideEntry *peptide)	ProteinResolver	static
getResults()	ProteinResolver
getSubsections() const	DefaultParamHandler
includeMSMSPeptides_(std::vector< PeptideIdentification > &peptide_identifications, std::vector< PeptideEntry > &peptide_nodes)	ProteinResolver	private
includeMSMSPeptides_(ConsensusMap &consensus, std::vector< PeptideEntry > &peptide_nodes)	ProteinResolver	private
operator=(const ProteinResolver &rhs)	ProteinResolver
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
primaryProteins_(std::vector< PeptideEntry > &peptide_nodes, std::vector< Size > &reindexed_peptides)	ProteinResolver	private
protein_data_	ProteinResolver	private
ProteinResolver()	ProteinResolver
ProteinResolver(const ProteinResolver &rhs)	ProteinResolver
reindexingNodes_(std::vector< MSDGroup > &msd_groups, std::vector< Size > &reindexed_proteins, std::vector< Size > &reindexed_peptides)	ProteinResolver	private
resolveConsensus(ConsensusMap &consensus)	ProteinResolver
resolveID(std::vector< PeptideIdentification > &peptide_identifications)	ProteinResolver
resolver_result_	ProteinResolver	private
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProteinData(std::vector< FASTAFile::FASTAEntry > &protein_data)	ProteinResolver
subsections_	DefaultParamHandler	protected
traversePeptide_(PeptideEntry *pep_node, MSDGroup &group)	ProteinResolver	private
traverseProtein_(ProteinEntry *prot_node, MSDGroup &group)	ProteinResolver	private
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProteinResolver() override	ProteinResolver