OpenMS
SvmTheoreticalSpectrumGenerator Member List

This is the complete list of members for SvmTheoreticalSpectrumGenerator, including all inherited members.

aa_to_index_SvmTheoreticalSpectrumGeneratorprotectedstatic
basicity_SvmTheoreticalSpectrumGeneratorprotectedstatic
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
generateDescriptorSet_(const AASequence &peptide, Size position, const IonType &type, Size precursor_charge, DescriptorSet &desc_set)SvmTheoreticalSpectrumGeneratorprotected
getDefaults() constDefaultParamHandler
getIonTypes() constSvmTheoreticalSpectrumGeneratorinline
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
helicity_SvmTheoreticalSpectrumGeneratorprotectedstatic
hide_type_SvmTheoreticalSpectrumGeneratorprotected
hydrophobicity_SvmTheoreticalSpectrumGeneratorprotectedstatic
initializedMaps_SvmTheoreticalSpectrumGeneratorprotectedstatic
initializeMaps_()SvmTheoreticalSpectrumGeneratorprotectedstatic
IntensityMap typedefSvmTheoreticalSpectrumGeneratorprotected
load()SvmTheoreticalSpectrumGenerator
mp_SvmTheoreticalSpectrumGeneratorprotected
operator=(const SvmTheoreticalSpectrumGenerator &tsg)SvmTheoreticalSpectrumGenerator
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
precursor_charge_SvmTheoreticalSpectrumGeneratorprotected
ResidueTypeToString_(Residue::ResidueType type)SvmTheoreticalSpectrumGeneratorprotected
scaleDescriptorSet_(DescriptorSet &desc, double lower, double upper)SvmTheoreticalSpectrumGeneratorprotected
scaleSingleFeature_(double &value, double feature_min, double feature_max, double lower=-1.0, double upper=1.0)SvmTheoreticalSpectrumGeneratorinlineprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
simulate(PeakSpectrum &spectrum, const AASequence &peptide, boost::random::mt19937_64 &rng, Size precursor_charge)SvmTheoreticalSpectrumGenerator
subsections_DefaultParamHandlerprotected
SvmTheoreticalSpectrumGenerator()SvmTheoreticalSpectrumGenerator
SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator &source)SvmTheoreticalSpectrumGenerator
SvmTheoreticalSpectrumGeneratorTrainer classSvmTheoreticalSpectrumGeneratorfriend
updateMembers_() overrideSvmTheoreticalSpectrumGeneratorprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~SvmTheoreticalSpectrumGenerator() overrideSvmTheoreticalSpectrumGenerator