TwoDOptimization Member List

This is the complete list of members for TwoDOptimization, including all inherited members.

check_defaults_	DefaultParamHandler	protected
curr_region_	TwoDOptimization	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
findMatchingPeaks_(std::multimap< double, IsotopeCluster >::iterator &it, PeakMap &ms_exp)	TwoDOptimization	protected
getDefaults() const	DefaultParamHandler
getMaxIterations() const	TwoDOptimization	inline
getMaxPeakDistance() const	TwoDOptimization	inline
getMZTolerance() const	TwoDOptimization	inline
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getPenalties() const	TwoDOptimization	inline
getRegionEndpoints_(PeakMap &exp, InputSpectrumIterator &first, InputSpectrumIterator &last, Size iso_map_idx, double noise_level, TwoDOptimization::Data &d)	TwoDOptimization	protected
getSubsections() const	DefaultParamHandler
InputSpectrumIterator typedef	TwoDOptimization
iso_map_	TwoDOptimization	protected
matching_peaks_	TwoDOptimization	protected
max_iteration_	TwoDOptimization	protected
max_peak_distance_	TwoDOptimization	protected
operator=(const TwoDOptimization &opt)	TwoDOptimization
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
optimize(InputSpectrumIterator first, InputSpectrumIterator last, PeakMap &ms_exp, bool real2D=true)	TwoDOptimization
optimizeRegions_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp)	TwoDOptimization	protected
optimizeRegionsScanwise_(InputSpectrumIterator &first, InputSpectrumIterator &last, PeakMap &ms_exp)	TwoDOptimization	protected
param_	DefaultParamHandler	protected
penalties_	TwoDOptimization	protected
real_2D_	TwoDOptimization	protected
searchInScan_(std::vector< double >::iterator scan_begin, std::vector< double >::iterator scan_end, double current_mz)	TwoDOptimization	protected
setMaxIterations(UInt max_iteration)	TwoDOptimization	inline
setMaxPeakDistance(double max_peak_distance)	TwoDOptimization	inline
setMZTolerance(double tolerance_mz)	TwoDOptimization	inline
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setPenalties(OptimizationFunctions::PenaltyFactorsIntensity &penalties)	TwoDOptimization	inline
subsections_	DefaultParamHandler	protected
tolerance_mz_	TwoDOptimization	protected
TwoDOptimization()	TwoDOptimization
TwoDOptimization(const TwoDOptimization &opt)	TwoDOptimization
updateMembers_() override	TwoDOptimization	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~TwoDOptimization() override	TwoDOptimization	inline