OpenMS
XQuestResultXMLFile Member List

This is the complete list of members for XQuestResultXMLFile, including all inherited members.

CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() constProgressLogger
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
getLogType() constProgressLogger
getMaxScore() constXQuestResultXMLFile
getMinScore() constXQuestResultXMLFile
getNumberOfHits() constXQuestResultXMLFile
getVersion() constXMLFile
getxQuestBase64EncodedSpectrum_(const PeakSpectrum &spec, const String &header, const bool &test_mode=false)XQuestResultXMLFileprivatestatic
GUI enum valueProgressLogger
isValid(const String &filename, std::ostream &os)XMLFile
last_invoke_ProgressLoggermutableprotected
load(const String &filename, std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids)XQuestResultXMLFile
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
max_score_XQuestResultXMLFileprivate
min_score_XQuestResultXMLFileprivate
n_hits_XQuestResultXMLFileprivate
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
parseBuffer_(const std::string &buffer, XMLHandler *handler)XMLFileprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
save_(const String &filename, XMLHandler *handler) constXMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
store(const String &filename, const std::vector< ProteinIdentification > &poid, const std::vector< PeptideIdentification > &peid) constXQuestResultXMLFile
type_ProgressLoggermutableprotected
wrap_(const String &input, Size width, String &output)XQuestResultXMLFileprivatestatic
writeXQuestXMLSpec(const String &out_file, const String &base_name, const OPXLDataStructs::PreprocessedPairSpectra &preprocessed_pair_spectra, const std::vector< std::pair< Size, Size > > &spectrum_pairs, const std::vector< std::vector< OPXLDataStructs::CrossLinkSpectrumMatch > > &all_top_csms, const PeakMap &spectra, const bool &test_mode=false)XQuestResultXMLFilestatic
writeXQuestXMLSpec(const String &out_file, const String &base_name, const std::vector< std::vector< OPXLDataStructs::CrossLinkSpectrumMatch > > &all_top_csms, const PeakMap &spectra, const bool &test_mode=false)XQuestResultXMLFilestatic
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XQuestResultXMLFile()XQuestResultXMLFile
~ProgressLogger()ProgressLoggervirtual
~XMLFile()XMLFilevirtual
~XQuestResultXMLFile() overrideXQuestResultXMLFile