MRMScoring Member List

This is the complete list of members for MRMScoring, including all inherited members.

calcLibraryScore(OpenSwath::IMRMFeature *mrmfeature, const std::vector< TransitionType > &transitions, double &correlation, double &norm_manhattan, double &manhattan, double &dotprod, double &spectral_angle, double &rmsd)	MRMScoring	static
calcMIPrecursorCombinedScore()	MRMScoring
calcMIPrecursorContrastScore()	MRMScoring
calcMIPrecursorScore()	MRMScoring
calcMIScore()	MRMScoring
calcMIWeightedScore(const std::vector< double > &normalized_library_intensity)	MRMScoring
calcRTScore(const PeptideType &peptide, double normalized_experimental_rt)	MRMScoring	static
calcSeparateMIContrastScore()	MRMScoring
calcSeparateSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators)	MRMScoring	static
calcSeparateXcorrContrastCoelutionScore()	MRMScoring
calcSeparateXcorrContrastShapeScore()	MRMScoring
calcSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators)	MRMScoring	static
calcXcorrCoelutionScore()	MRMScoring
calcXcorrCoelutionWeightedScore(const std::vector< double > &normalized_library_intensity)	MRMScoring
calcXcorrContrastCoelutionScore()	MRMScoring
calcXcorrContrastShapeScore()	MRMScoring
calcXcorrPrecursorCoelutionScore()	MRMScoring
calcXcorrPrecursorCombinedCoelutionScore()	MRMScoring
calcXcorrPrecursorCombinedShapeScore()	MRMScoring
calcXcorrPrecursorContrastCoelutionScore()	MRMScoring
calcXcorrPrecursorContrastShapeScore()	MRMScoring
calcXcorrPrecursorContrastSumFragCoelutionScore()	MRMScoring
calcXcorrPrecursorContrastSumFragShapeScore()	MRMScoring
calcXcorrPrecursorShapeScore()	MRMScoring
calcXcorrShapeScore()	MRMScoring
calcXcorrShapeWeightedScore(const std::vector< double > &normalized_library_intensity)	MRMScoring
FeatureType typedef	MRMScoring
getMIContrastMatrix() const	MRMScoring
getMIMatrix() const	MRMScoring
getMIPrecursorCombinedMatrix() const	MRMScoring
getMIPrecursorContrastMatrix() const	MRMScoring
getXCorrContrastMatrix() const	MRMScoring
getXCorrMatrix() const	MRMScoring
getXCorrPrecursorCombinedMatrix() const	MRMScoring
getXCorrPrecursorContrastMatrix() const	MRMScoring
initializeMIContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids_set1, const std::vector< std::string > &native_ids_set2)	MRMScoring
initializeMIMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids)	MRMScoring
initializeMIPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)	MRMScoring
initializeMIPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)	MRMScoring
initializeMIPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids)	MRMScoring
initializeXCorrContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids_set1, const std::vector< std::string > &native_ids_set2)	MRMScoring
initializeXCorrMatrix(const std::vector< std::vector< double > > &data)	MRMScoring
initializeXCorrMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids)	MRMScoring
initializeXCorrPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)	MRMScoring
initializeXCorrPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)	MRMScoring
initializeXCorrPrecursorContrastMatrix(const std::vector< std::vector< double > > &data_precursor, const std::vector< std::vector< double > > &data_fragments)	MRMScoring
initializeXCorrPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids)	MRMScoring
mi_contrast_matrix_	MRMScoring	private
mi_matrix_	MRMScoring	private
mi_precursor_combined_matrix_	MRMScoring	private
mi_precursor_contrast_matrix_	MRMScoring	private
mi_precursor_matrix_	MRMScoring	private
PeptideType typedef	MRMScoring
ProteinType typedef	MRMScoring
SpectrumType typedef	MRMScoring
TransitionType typedef	MRMScoring
xcorr_contrast_matrix_	MRMScoring	private
xcorr_contrast_matrix_max_peak_sec_	MRMScoring	private
xcorr_matrix_	MRMScoring	private
xcorr_matrix_max_peak_	MRMScoring	private
xcorr_matrix_max_peak_sec_	MRMScoring	private
xcorr_precursor_combined_matrix_	MRMScoring	private
xcorr_precursor_contrast_matrix_	MRMScoring	private
xcorr_precursor_matrix_	MRMScoring	private
XCorrArrayType typedef	MRMScoring
XCorrMatrixType typedef	MRMScoring