- f -

FailedAPICall() : FailedAPICall
FalseDiscoveryRate() : FalseDiscoveryRate
FASTAContainer() : FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector >
FASTAEntry() : FASTAFile::FASTAEntry
FASTAFile() : FASTAFile
fatalError() : XMLHandler , XMLValidator
fdr_xprophet_() : XFDRAlgorithm
Feature() : Feature
feature() : KDTreeFeatureMaps
FeatureDeconvolution() : FeatureDeconvolution
FeatureDistance() : FeatureDistance
FeatureEditDialog() : FeatureEditDialog
FeatureFileOptions() : FeatureFileOptions
FeatureFinderAlgorithm() : FeatureFinderAlgorithm
FeatureFinderAlgorithmMetaboIdent() : FeatureFinderAlgorithmMetaboIdent
FeatureFinderAlgorithmPicked() : FeatureFinderAlgorithmPicked
FeatureFinderIdentificationAlgorithm() : FeatureFinderIdentificationAlgorithm
FeatureFinderMetaboIdentCompound() : FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound
FeatureFinderMultiplexAlgorithm() : FeatureFinderMultiplexAlgorithm
FeatureFindingMetabo() : FeatureFindingMetabo
FeatureGroupingAlgorithm() : FeatureGroupingAlgorithm
FeatureGroupingAlgorithmKD() : FeatureGroupingAlgorithmKD
FeatureGroupingAlgorithmLabeled() : FeatureGroupingAlgorithmLabeled
FeatureGroupingAlgorithmQT() : FeatureGroupingAlgorithmQT
FeatureGroupingAlgorithmUnlabeled() : FeatureGroupingAlgorithmUnlabeled
FeatureHandle() : FeatureHandle
FeatureHandleMutable_() : FeatureHandle::FeatureHandleMutable_
FeatureHypothesis() : FeatureHypothesis
FeatureMap() : FeatureMap
FeatureOpenMS() : FeatureOpenMS
FeatureSummary() : FeatureSummary
FeatureXMLFile() : FeatureXMLFile
FeatureXMLHandler() : FeatureXMLHandler
fetchSpectrumSwath() : OpenSwathScoring
FIAMSDataProcessor() : FIAMSDataProcessor
FIAMSScheduler() : FIAMSScheduler
FidHandler() : FidHandler
field_changed_() : DataFilterDialog
file_() : GlobalExceptionHandler
fileChanged() : FileWatcher
fileChanged_() : TOPPViewBase
FileEmpty() : FileEmpty
fileList() : File
FileMapping() : FileMapping
fileNamesValid() : TOPPASInputFileListVertex
FileNameTooLong() : FileNameTooLong
FileNotFound() : FileNotFound
FileNotReadable() : FileNotReadable
FileNotWritable() : FileNotWritable
fileOpen() : QApplicationTOPP
fileParamValidityCheck_() : TOPPBase
fileSize() : File
FileTypeList() : FileTypeList
FileWatcher() : FileWatcher
fillCalibrants() : InternalCalibration
fillChromatogramData_() : MzMLHandler
fillComboBox_() : BaseVisualizerGUI
fillComboBoxes_() : TOPPASIOMappingDialog
fillData_() : MzDataHandler
fillDensities() : PosteriorErrorProbabilityModel
fillEvidenceMapping_() : ProteinIdentification
fillExtendedResidueTable_() : IntegerMassDecomposer< ValueType, DecompositionValueType >
fillFromInputLine() : FuzzyStringComparator::StreamElement_
fillGaps_() : CoarseIsotopePatternGenerator
fillID_() : InternalCalibration
fillIDs_() : InternalCalibration
fillIndistinguishableGroupsWithSingletons() : ProteinIdentification
fillInputVector_() : IsobaricIsotopeCorrector
fillIntensities() : BaseModel
fillIntensity() : BaseModel
fillLabelMasterList_() : MultiplexDeltaMassesGenerator
fillLeft() : String
fillLogDensities() : PosteriorErrorProbabilityModel
fillLogDensitiesGumbel() : PosteriorErrorProbabilityModel
fillModMapping_() : ProteinIdentification
fillPeptideScoreMap_() : IDScoreGetterSetter
fillRight() : String
fillRow_() : SpectraIDViewTab
fillVectorsOfMessagePassers() : MessagePasserFactory< Label >
filter() : FeatureOverlapFilter , GaussFilter , GaussFilterAlgorithm , MorphologicalFilter , MultiplexFilteringCentroided , MultiplexFilteringProfile , SavitzkyGolayFilter , TOPPASTreeView
FilterableList() : FilterableList
filterAveragineModel_() : MultiplexFiltering , MultiplexFilteringProfile
filterBasedOnMolFormAdductOccurrence_() : MetaboTargetedAssay
filterBasedOnTotalOccurrence_() : MetaboTargetedAssay
filterByBasenames() : ExperimentalDesign
filterByDrift() : ISpectrumAccess
filterByMissedCleavages() : EnzymaticDigestion
filterByPeakWidth() : ElutionPeakDetection
filterCCs_() : MapAlignmentAlgorithmKD
filterChanged() : FilterableList , FilterList
filterEdit_() : FilterList
filterEdited_() : FilterableList
filterExperiment() : GaussFilter , MorphologicalFilter , SavitzkyGolayFilter
FilterFeatureMap() : MRMFeatureFilter
FilterFeatureMapBackgroundInterference() : MRMFeatureFilter
FilterFeatureMapPercRSD() : MRMFeatureFilter
filterFeatures_() : FeatureFinderIdentificationAlgorithm
filterFeaturesFinalizeAssay_() : FeatureFinderIdentificationAlgorithm
filterGroupsByScore() : IDFilter
filterHits_() : MetaDataBrowser
filterHitsByRank() : IDFilter
filterHitsByScore() : IDFilter
FilterList() : FilterList
filterLowPeaks() : TOPPFLASHDeconv
filterMassBins_() : FLASHDeconvAlgorithm
filterMinMaxTransitionsCompound() : MRMAssay
filterObservationMatchesByScore() : IDFilter
filterPeakMap() : NLargest , Normalizer , RankScaler , SqrtScaler , ThresholdMower , WindowMower
filterPeakPositions_() : MultiplexFiltering
filterPeakSpectrum() : NLargest , Normalizer , RankScaler , SqrtScaler , ThresholdMower , WindowMower
filterPeakSpectrumForTopNInJumpingWindow() : WindowMower
filterPeakSpectrumForTopNInSlidingWindow() : WindowMower
filterPeptideCorrelation_() : MultiplexFiltering , MultiplexFilteringProfile
filterPeptideEvidences() : IDFilter::DigestionFilter , IDFilter
FilterPeptideEvidences() : IDFilter
filterPeptidesByCharge() : IDFilter
filterPeptidesByLength() : IDFilter
filterPeptidesByMZ() : IDFilter
filterPeptidesByMZError() : IDFilter
filterPeptidesByRT() : IDFilter
filterPeptidesByRTPredictPValue() : IDFilter
filterPeptideSequences() : IDFilter::PeptideDigestionFilter
filterPrecursorsByTags() : OPXLHelper
filterRange() : MorphologicalFilter
filterSpectrum() : NLargest , Normalizer , RankScaler , SqrtScaler , ThresholdMower
filterToolTree_() : TOPPASBase
filterUnreferencedDecoysCompound() : MRMAssay
finalizeCluster() : QTCluster
find() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , File
find_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
find_nearest() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
find_nearest_if() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
find_within_range() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
findBestIsotopeFit_() : FeatureFinderAlgorithmPicked
findByIndex() : SpectrumLookup
findByNativeID() : SpectrumLookup
findByReference() : SpectrumLookup
findByRegExpMatch_() : SpectrumLookup
findByRT() : SpectrumLookup
findByScanNumber() : SpectrumLookup
findCandidatePositions_() : NeighborSeq
findChildBFS_() : ACTrie
findChildNaive_() : ACTrie
findClosestDataPoint() : LayerData1DChrom , LayerData1DIonMobility , LayerData1DPeak , LayerDataBase
findClosestPeak_() : PeakPickerChromatogram
findCommonMetaKeys() : MetaInfoInterfaceUtils
findComponentFeature_() : AbsoluteQuantitationStandards
findConnectedComponent() : PeptideProteinResolution
findDatabase() : File
findDecoyString() : DecoyHelper , FalseDiscoveryRate::DecoyStringHelper
findDoc() : File
findEntry() : Param::ParamNode
findEntry_() : TOPPBase
findEntryRecursive() : Param::ParamNode
findExecutable() : File
findFeatures() : MassFeatureTrace
findFirst() : Param
findFixedAndTermResidues_() : MRMDecoy
findFixedResidues() : MRMDecoy
findFixedResidues_() : MRMDecoy
findHighestDataPoint() : LayerDataBase , LayerDataChrom , LayerDataConsensus , LayerDataFeature , LayerDataIdent , LayerDataIonMobility , LayerDataPeak
findHighestInWindow() : Mobilogram , MSSpectrum
findHit() : ProteinIdentification
findIndexListOffset() : IndexedMzMLDecoder
findIsotope_() : FeatureFinderAlgorithmPicked
findLargestPeak() : MRMTransitionGroupPicker
findLocalExtrema() : ElutionPeakDetection
findLocalFeatures_() : FeatureFindingMetabo
findMatches() : ModificationDefinitionsSet
findMaxByIntPeak() : MassTrace
findModificationIndex() : ModificationsDB
findNearest() : Mobilogram , MSChromatogram , MSSpectrum , MZTrafoModel
findNearestNeighbour_() : GridBasedClustering< Metric >
findNearestPeak_() : Plot2DCanvas
findNext() : Param
findNode() : Param::ParamNode
findParentOf() : Param::ParamNode
findPeakAtPosition_() : Plot1DCanvas
findPeptide() : TransitionHelper
findPluginExecutable() : TVToolDiscovery
findPosAtPeakHeightPercent_() : PeakIntegrator
findPythonScript_() : SwathTabWidget
findR() : RWrapper
findReferenceChannel_() : IsobaricNormalizer
findScoreType() : IdentificationData , IDScoreSwitcherAlgorithm
findScript() : RWrapper
findSearchParameters_() : MzIdentMLDOMHandler
findSiblingTOPPExecutable() : File
findStream_() : LogStream
findSwathMapsPasef() : SwathMapMassCorrection
findTopUniqueHits_() : XFDRAlgorithm
findWidestPeakIndices() : MRMTransitionGroupPicker
FineIsotopePatternGenerator() : FineIsotopePatternGenerator
finishAdding_() : BaseVisualizerGUI , Plot1DCanvas , Plot2DCanvas , Plot3DCanvas , PlotCanvas
finishContextMenu_() : Plot2DCanvas
finishHoveringEdge() : TOPPASScene , TOPPASVertex
finishTOPPToolExecution() : TOPPViewBase
firstExec() : TOPPASIOMappingDialog
firstToUpper() : String
fit() : EGHTraceFitter , GaussTraceFitter , GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , PosteriorErrorProbabilityModel , TraceFitter
fit1d() : BiGaussFitter1D , EmgFitter1D , ExtendedIsotopeFitter1D , Fitter1D , GaussFitter1D , IsotopeFitter1D
fitAndValidateModel_() : ElutionModelFitter
fitCalibration() : AbsoluteQuantitation
fitElutionModels() : ElutionModelFitter
fitEMGPeakModel() : EmgGradientDescent
fitGumbelGauss() : PosteriorErrorProbabilityModel
fitLOWESS() : MapAlignmentAlgorithmKD
fitModel() : TransformationDescription
fitOffset_() : MaxLikeliFitter1D
fitRT_() : EmgScoring
Fitter1D() : Fitter1D
fitWeighted() : GumbelDistributionFitter , GumbelMaxLikelihoodFitter
fixRange() : Plot1DGoToDialog
FlagSet() : FlagSet< ENUM >
FLASHDeconvAlgorithm() : FLASHDeconvAlgorithm
FLASHDeconvTabWidget() : FLASHDeconvTabWidget
FLASHDeconvWizardBase() : FLASHDeconvWizardBase
flipLayer() : Plot1DCanvas
flippedLayersExist() : Plot1DCanvas
floatfield() : BK_PrecPolicyFull< T >
flush() : IChromatogramsWriter , ISpectraWriter , LogStream , MSDataSqlConsumer
focusByTab() : TOPPASBase
focusInEvent() : OpenMSLineEdit
focusOutEvent() : OpenMSLineEdit , Plot3DOpenGLCanvas , PlotCanvas
follow_() : ACTrie
followRedirect() : MascotRemoteQuery
followSpawn_() : ACTrie
followUpValid() : IsobaricChannelExtractor::PuritySate_
for_each_base_() : RangeManager< RangeBases >
formattedValue() : DimBase
forwardTOPPOutput() : TOPPASToolVertex
FragmentAnnotationDetail_() : RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
fragmentAnnotationDetailsToPHFA() : RNPxlFragmentAnnotationHelper
FragmentMassError() : FragmentMassError
fromCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
fromConsensusMap() : ExperimentalDesign
fromFeatureMap() : ExperimentalDesign
fromFileDialogFilter() : FileTypeList
fromIdentifications() : ExperimentalDesign
fromIMUnit() : IMTypes
fromLocalFile() : TOPPASResource
fromNative_() : StringManager
fromNativeID() : OSWData
fromQStringList() : StringListUtils
fromString() : AASequence , DataFilters::DataFilter , DateTime , EmpiricalFormula , MultiGradient , NASequence
fromXSDString() : XMLHandler
fromXY() : DimBase , DimIM , DimINT , DimMapper< N_DIM > , DimMZ , DimRT
front() : ConstRefVector< ContainerT > , Mobilogram
fullDimensionName() : MobilityPeak2D , Peak2D
fullDimensionNameIM() : MobilityPeak2D
fullDimensionNameMZ() : MobilityPeak2D , Peak2D
fullDimensionNameRT() : Peak2D
fullDimensionUnit() : MobilityPeak2D , Peak2D
fullDimensionUnitIM() : MobilityPeak2D
fullDimensionUnitMZ() : MobilityPeak2D , Peak2D
fullDimensionUnitRT() : Peak2D
FullSwathFileConsumer() : FullSwathFileConsumer
function_() : GlobalExceptionHandler
FuzzyStringComparator() : FuzzyStringComparator
FWHM() : FWHM