OpenMS
TMTTenPlexQuantitationMethod.h
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1 // Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
2 // SPDX-License-Identifier: BSD-3-Clause
3 //
4 // --------------------------------------------------------------------------
5 // $Maintainer: Timo Sachsenberg $
6 // $Authors: Stephan Aiche $
7 // --------------------------------------------------------------------------
8 
9 #pragma once
10 
11 #include <OpenMS/config.h>
12 
14 
15 namespace OpenMS
16 {
22  class OPENMS_DLLAPI TMTTenPlexQuantitationMethod :
24  {
25 public:
28 
30  ~TMTTenPlexQuantitationMethod() override = default;
31 
34 
37 
40 
41  const String& getMethodName() const override;
42 
43  const IsobaricChannelList& getChannelInformation() const override;
44 
45  Size getNumberOfChannels() const override;
46 
48 
49  Size getReferenceChannel() const override;
50 
52 
53  private:
56 
58  static const String name_;
59 
62 
64  static const std::vector<std::string> channel_names_;
65 
66  protected:
69 
71  void updateMembers_() override;
72 
73  };
74 } // namespace
75 
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:32
std::vector< IsobaricChannelInformation > IsobaricChannelList
Definition: IsobaricQuantitationMethod.h:72
A more convenient string class.
Definition: String.h:34
TMT 10plex quantitation to be used with the IsobaricQuantitation.
Definition: TMTTenPlexQuantitationMethod.h:24
static const std::vector< std::string > channel_names_
List of available channel names as they are presented to the user.
Definition: TMTTenPlexQuantitationMethod.h:64
const IsobaricChannelList & getChannelInformation() const override
Returns information on the different channels used by the quantitation method.
Size reference_channel_
The reference channel for this experiment.
Definition: TMTTenPlexQuantitationMethod.h:61
const String & getMethodName() const override
Methods to implement from IsobaricQuantitationMethod.
Size getReferenceChannel() const override
Returns the index of the reference channel in the IsobaricChannelList (see IsobaricQuantitationMethod...
void setDefaultParams_()
implemented for DefaultParamHandler
TMTTenPlexQuantitationMethod & operator=(const TMTTenPlexQuantitationMethod &rhs)
Assignment operator.
Size getNumberOfChannels() const override
Gives the number of channels available for this quantitation method.
~TMTTenPlexQuantitationMethod() override=default
d'tor
TMTTenPlexQuantitationMethod(const TMTTenPlexQuantitationMethod &other)
Copy c'tor.
TMTTenPlexQuantitationMethod()
Default c'tor.
void updateMembers_() override
implemented for DefaultParamHandler
static const String name_
The name of the quantitation method.
Definition: TMTTenPlexQuantitationMethod.h:58
Matrix< double > getIsotopeCorrectionMatrix() const override
Returns an isotope correction matrix suitable for the given quantitation method.
IsobaricChannelList channels_
the actual information on the different tmt10plex channels.
Definition: TMTTenPlexQuantitationMethod.h:55
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:101
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:22