BasicProteinInferenceAlgorithm Member List

This is the complete list of members for BasicProteinInferenceAlgorithm, including all inherited members.

aggFromString_(const std::string &method_string) const	BasicProteinInferenceAlgorithm	private
aggFunFromEnum_(const BasicProteinInferenceAlgorithm::AggregationMethod &agg_method, bool higher_better) const	BasicProteinInferenceAlgorithm	private
aggregatePeptideScores_(SequenceToChargeToPSM &best_pep, std::vector< PeptideIdentification > &pep_ids, const String &overall_score_type, bool higher_better, const std::string &run_id) const	BasicProteinInferenceAlgorithm	private
AggregationMethod enum name	BasicProteinInferenceAlgorithm
BasicProteinInferenceAlgorithm()	BasicProteinInferenceAlgorithm
check_defaults_	DefaultParamHandler	protected
checkCompat_(const String &score_type, const AggregationMethod &aggregation_method) const	BasicProteinInferenceAlgorithm	private
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
error_name_	DefaultParamHandler	protected
fptr typedef	BasicProteinInferenceAlgorithm	private
getDefaults() const	DefaultParamHandler
getInitScoreForAggMethod_(const AggregationMethod &aggregation_method, bool higher_better) const	BasicProteinInferenceAlgorithm	private
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
GUI enum value	ProgressLogger
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
logTypeToFactoryName_(LogType type)	ProgressLogger	protectedstatic
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
processRun_(std::unordered_map< std::string, std::pair< ProteinHit *, Size >> &acc_to_protein_hitP_and_count, SequenceToChargeToPSM &best_pep, ProteinIdentification &prot_run, std::vector< PeptideIdentification > &pep_ids) const	BasicProteinInferenceAlgorithm	private
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
recursion_depth_	ProgressLogger	protectedstatic
run(std::vector< PeptideIdentification > &pep_ids, std::vector< ProteinIdentification > &prot_ids) const	BasicProteinInferenceAlgorithm
run(std::vector< PeptideIdentification > &pep_ids, ProteinIdentification &prot_id) const	BasicProteinInferenceAlgorithm
run(ConsensusMap &cmap, ProteinIdentification &prot_id, bool include_unassigned) const	BasicProteinInferenceAlgorithm
SequenceToChargeToPSM typedef	BasicProteinInferenceAlgorithm
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
type_	ProgressLogger	mutableprotected
updateMembers_()	DefaultParamHandler	protectedvirtual
updateProteinScores_(std::unordered_map< std::string, std::pair< ProteinHit *, Size >> &acc_to_protein_hitP_and_count, const SequenceToChargeToPSM &best_pep, bool pep_scores, bool higher_better) const	BasicProteinInferenceAlgorithm	private
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProgressLogger()	ProgressLogger	virtual