OpenMS
Class Index
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A
AA (OpenMS)
AAIndex (OpenMS)
AASequence (OpenMS)
OPXLDataStructs::AASeqWithMass (OpenMS)
OPXLDataStructs::AASeqWithMassComparator (OpenMS)
FuzzyStringComparator::AbortComparison (OpenMS)
AbsoluteQuantitation (OpenMS)
AbsoluteQuantitationMethod (OpenMS)
AbsoluteQuantitationMethodFile (OpenMS)
AbsoluteQuantitationStandards (OpenMS)
AbsoluteQuantitationStandardsFile (OpenMS)
SiriusMSFile::AccessionInfo (OpenMS)
AccurateMassSearchEngine (OpenMS)
AccurateMassSearchResult (OpenMS)
ACNode (OpenMS)
Acquisition (OpenMS)
AcquisitionInfo (OpenMS)
AcquisitionInfoVisualizer (OpenMS)
AcquisitionVisualizer (OpenMS)
AcqusHandler (OpenMS::Internal)
ACSpawn (OpenMS)
TOPPViewMenu::ActionRequirement_ (OpenMS)
ACTrie (OpenMS)
ACTrieState (OpenMS)
Adduct (OpenMS)
AdductCompare (OpenMS::IdentificationDataInternal)
AdductInfo (OpenMS)
MSstatsFile::AggregatedConsensusInfo (OpenMS)
TriqlerFile::AggregatedConsensusInfo (OpenMS)
always_true (KDTree)
PepXMLFile::AminoAcidModification (OpenMS)
MzIdentMLDOMHandler::AnalysisSoftware (OpenMS::Internal)
MSQuantifications::AnalysisSummary (OpenMS)
NucleicAcidSearchEngine::AnnotatedHit
SimpleSearchEngineAlgorithm::AnnotatedHit_ (OpenMS)
Annotation1DCaret (OpenMS)
Annotation1DDistanceItem (OpenMS)
Annotation1DItem (OpenMS)
Annotation1DPeakItem (OpenMS)
Annotation1DTextItem (OpenMS)
Annotation1DVerticalLineItem (OpenMS)
Annotations1DContainer (OpenMS)
AnnotationStatistics (OpenMS)
MassTraceDetection::Apex (OpenMS)
AppliedProcessingStep (OpenMS::IdentificationDataInternal)
Area (OpenMS)
AreaIterator (OpenMS::Internal)
Args (OpenMS::Internal)
AScore (OpenMS)
MSQuantifications::Assay (OpenMS)
AsymmetricStatistics (OpenMS::Math)
QcMLFile::Attachment (OpenMS)
AverageLinkage (OpenMS)
AveragePosition (OpenMS::Math)
AxisPainter (OpenMS)
AxisTickCalculator (OpenMS)
AxisWidget (OpenMS)
B
Base64 (OpenMS)
BaseException (OpenMS::Exception)
BaseFeature (OpenMS)
BaseGroupFinder (OpenMS)
BaseModel (OpenMS)
BaseSuperimposer (OpenMS)
BaseVisualizer (OpenMS)
BaseVisualizerGUI (OpenMS)
BasicProteinInferenceAlgorithm (OpenMS)
BasicStatistics (OpenMS::Math)
BayesianProteinInferenceAlgorithm (OpenMS)
BernNorm (OpenMS)
BiGaussFitter1D (OpenMS)
BiGaussModel (OpenMS)
BilinearInterpolation (OpenMS::Math)
MzMLHandlerHelper::BinaryData (OpenMS::Internal)
BinaryDataArray (OpenMS::Interfaces)
BinaryTreeNode (OpenMS)
BinnedSharedPeakCount (OpenMS)
BinnedSpectralContrastAngle (OpenMS)
BinnedSpectrum (OpenMS)
TargetedSpectraExtractor::BinnedSpectrumComparator (OpenMS)
BinnedSpectrumCompareFunctor (OpenMS)
BinnedSumAgreeingIntensities (OpenMS)
BK_PrecPolicy (OpenMS::StringConversions)
FeatureFinderAlgorithmIsotopeWavelet::BoxElement (OpenMS)
IsotopeWaveletTransform::BoxElement (OpenMS)
BSpline (eol_bspline)
BSpline2d (OpenMS)
BufferOverflow (OpenMS::Exception)
QTCluster::BulkData (OpenMS)
Bzip2Ifstream (OpenMS)
Bzip2InputStream (OpenMS)
C
CachedmzML (OpenMS)
CachedMzMLHandler (OpenMS::Internal)
CachedSwathFileConsumer (OpenMS)
InternalCalibration::CalibrantStats_ (OpenMS)
CalibrationData (OpenMS)
ItraqConstants::ChannelInfo (OpenMS)
IsotopeCluster::ChargedIndexSet (OpenMS)
ChargePair (OpenMS)
TheoreticalSpectrumGenerationDialog::CheckBox (OpenMS)
Chromatogram (OpenMS::Interfaces)
MzMLHandler::ChromatogramData (OpenMS::Internal)
ChromatogramExtractor (OpenMS)
ChromatogramExtractorAlgorithm (OpenMS)
ChromatogramMeta (OpenMS::Interfaces)
ChromatogramPeak (OpenMS)
ChromatogramSettings (OpenMS)
ChromatogramTools (OpenMS)
ChromeleonFile (OpenMS)
ChromExtractParams (OpenMS)
MSSpectrum::Chunk (OpenMS)
MSSpectrum::Chunks (OpenMS)
Citation (OpenMS)
OPXLDataStructs::CLSMScoreComparator (OpenMS)
ClusterAnalyzer (OpenMS)
ClusterFunctor (OpenMS)
ClusterHierarchical (OpenMS)
ClusteringGrid (OpenMS)
ClusterProxyKD (OpenMS)
MzTab::CMMzTabStream (OpenMS)
CmpHypothesesByScore (OpenMS)
CmpMassTraceByMZ (OpenMS)
CoarseIsotopePatternGenerator (OpenMS)
ColorBrewer (OpenMS::GUIHelpers)
Colorizer (OpenMS)
ColorSelector (OpenMS)
Colorizer::ColorWithUndo_ (OpenMS)
ConsensusMap::ColumnHeader (OpenMS)
Command (OpenMS::Internal)
TargetedSpectraExtractor::Comparator (OpenMS)
MapAlignmentAlgorithmSpectrumAlignment::Compare (OpenMS)
AccurateMassSearchEngine::CompareEntryAndMass_ (OpenMS)
CompareMzTabMMatchRef (OpenMS)
ComplementFilter (OpenMS)
ComplementMarker (OpenMS)
CompleteLinkage (OpenMS)
Compomer (OpenMS)
MRMFeatureQC::ComponentGroupPairQCs (OpenMS)
MRMFeaturePicker::ComponentGroupParams (OpenMS)
MRMFeatureQC::ComponentGroupQCs (OpenMS)
MRMFeaturePicker::ComponentParams (OpenMS)
MRMFeatureQC::ComponentQCs (OpenMS)
Compound (OpenMS::TargetedExperimentHelper)
SiriusMSFile::CompoundInfo (OpenMS)
MetaboTargetedAssay::CompoundSpectrumPair (OpenMS)
MetaboTargetedAssay::CompoundTargetDecoyPair (OpenMS)
CompressedInputSource (OpenMS)
ConfidenceScoring (OpenMS)
Configuration (OpenMS::TargetedExperimentHelper)
ConnectedComponent (OpenMS)
ConsensusFeature (OpenMS)
ConsensusIDAlgorithm (OpenMS)
ConsensusIDAlgorithmAverage (OpenMS)
ConsensusIDAlgorithmBest (OpenMS)
ConsensusIDAlgorithmIdentity (OpenMS)
ConsensusIDAlgorithmPEPIons (OpenMS)
ConsensusIDAlgorithmPEPMatrix (OpenMS)
ConsensusIDAlgorithmRanks (OpenMS)
ConsensusIDAlgorithmSimilarity (OpenMS)
ConsensusIDAlgorithmWorst (OpenMS)
ConsensusMap (OpenMS)
ConsensusMapMergerAlgorithm (OpenMS)
ConsensusMapNormalizerAlgorithmMedian (OpenMS)
ConsensusMapNormalizerAlgorithmQuantile (OpenMS)
ConsensusMapNormalizerAlgorithmThreshold (OpenMS)
ConsensusXMLFile (OpenMS)
ConsensusXMLHandler (OpenMS::Internal)
ConsoleUtils (OpenMS)
AASequence::ConstIterator (OpenMS)
HashGrid::ConstIterator (OpenMS)
NASequence::ConstIterator (OpenMS)
ConstRefVector (OpenMS)
ConstRefVector::ConstRefVectorConstIterator (OpenMS)
ConstRefVector::ConstRefVectorIterator (OpenMS)
Contact (OpenMS::TargetedExperimentHelper)
ContactPerson (OpenMS)
ContactPersonVisualizer (OpenMS)
MSExperiment::ContainerAdd_ (OpenMS)
MSExperiment::ContainerAdd_< ContainerValueType, false > (OpenMS)
MSExperiment::ContainerAdd_< ContainerValueType, true > (OpenMS)
Contaminants (OpenMS)
Contaminants::ContaminantsSummary (OpenMS)
ContinuousWaveletTransform (OpenMS)
ContinuousWaveletTransformNumIntegration (OpenMS)
ControlledVocabulary (OpenMS)
ConversionError (OpenMS::Exception)
ConvexHull2D (OpenMS)
CrossLinksDB (OpenMS)
OPXLDataStructs::CrossLinkSpectrumMatch (OpenMS)
CsiFingerIdMzTabWriter::CsiAdapterHit (OpenMS)
CsiFingerIdMzTabWriter::CsiAdapterIdentification (OpenMS)
CsiFingerIdMzTabWriter::CsiAdapterRun (OpenMS)
CsiFingerIdMzTabWriter (OpenMS)
CsvFile (OpenMS)
CSVWriter (OpenSwath)
CubicSpline2d (OpenMS)
CV (OpenMS::TargetedExperimentHelper)
CVMappingFile (OpenMS)
CVMappingRule (OpenMS)
CVMappings (OpenMS)
CVMappingTerm (OpenMS)
CVReference (OpenMS)
ControlledVocabulary::CVTerm (OpenMS)
CVTerm (OpenMS)
SemanticValidator::CVTerm (OpenMS::Internal)
CVTermList (OpenMS)
CVTermListInterface (OpenMS)
D
EmgFitter1D::Data (OpenMS)
OptimizePeakDeconvolution::Data (OpenMS)
OptimizePick::Data (OpenMS)
TwoDOptimization::Data (OpenMS)
MzIdentMLDOMHandler::DatabaseInput (OpenMS::Internal)
DataFilters::DataFilter (OpenMS)
DataFilterDialog (OpenMS)
DataFilters (OpenMS)
DataMatrix (OpenSwath)
TransformationModel::DataPoint (OpenMS)
DataProcessing (OpenMS)
DataProcessingVisualizer (OpenMS)
DataSelectionTabs (OpenMS)
DataTabBase (OpenMS)
DataValue (OpenMS)
Date (OpenMS)
DateTime (OpenMS)
DaTrait (OpenMS)
DBoundingBox (OpenMS)
DBSearchParam (OpenMS::IdentificationDataInternal)
MzIdentMLDOMHandler::DBSequence (OpenMS::Internal)
DBSuitability (OpenMS)
DBSuitability_friend (OpenMS)
DeconvolvedSpectrum (OpenMS)
DecoyGenerator (OpenMS)
DecoyHelper (OpenMS)
DecoyHelper::DecoyStatistics (OpenMS)
FalseDiscoveryRate::DecoyStringHelper (OpenMS)
DefaultParamHandler (OpenMS)
Deisotoper (OpenMS)
MultiplexDeltaMasses::DeltaMass (OpenMS)
DepletedIDPool (OpenMS::Exception)
ACNode::DepthHits (OpenMS)
IDBoostGraph::dfs_ccsplit_visitor (OpenMS::Internal)
DiaPrescore (OpenMS)
DIAScoring (OpenMS)
DIATreeTab (OpenMS)
Digestion (OpenMS)
DigestionEnzyme (OpenMS)
DigestionEnzymeDB (OpenMS)
DigestionEnzymeProtein (OpenMS)
DigestionEnzymeRNA (OpenMS)
IDFilter::DigestionFilter (OpenMS)
DigestionVisualizer (OpenMS)
DimBase (OpenMS)
DimIM (OpenMS)
DimINT (OpenMS)
DimMapper (OpenMS)
DimMZ (OpenMS)
DimRT (OpenMS)
DIntervalBase (OpenMS::Internal)
DistanceMatrix (OpenMS)
FeatureDistance::DistanceParams_ (OpenMS)
ColorBrewer::Distinct (OpenMS::GUIHelpers)
DivisionByZero (OpenMS::Exception)
DocumentIdentifier (OpenMS)
DocumentIdentifierVisualizer (OpenMS)
ListUtils::DoubleTolerancePredicate_ (OpenMS)
DPeak (OpenMS)
DPosition (OpenMS)
DRange (OpenMS)
DTA2DFile (OpenMS)
DTAFile (OpenMS)
E
EDTAFile (OpenMS)
EGHTraceFitter (OpenMS)
EGHTraceFitter::EGHTraceFunctor (OpenMS)
EmgFitter1D::EgmFitterFunctor (OpenMS)
Element (OpenMS)
QTCluster::Element (OpenMS)
ElementDB (OpenMS)
ElementNotFound (OpenMS::Exception)
ElutionModelFitter (OpenMS)
ElutionPeakDetection (OpenMS)
EmgFitter1D (OpenMS)
EmgGradientDescent (OpenMS)
EmgGradientDescent_friend (OpenMS)
EmgModel (OpenMS)
EmgScoring (OpenMS)
EmpiricalFormula (OpenMS)
XMLHandler::EndParsingSoftly (OpenMS::Internal)
EnhancedTabBar (OpenMS)
EnhancedTabBarWidgetInterface (OpenMS)
EnhancedWorkspace (OpenMS)
EnzymaticDigestion (OpenMS)
EuclideanSimilarity (OpenMS)
ExperimentalDesign (OpenMS)
ExperimentalDesignFile (OpenMS)
ExperimentalSettings (OpenMS)
ExperimentalSettingsVisualizer (OpenMS)
ExposedVector (OpenMS)
ExtendedIsotopeFitter1D (OpenMS)
ExtendedIsotopeModel (OpenMS)
ExternalProcess (OpenMS)
ExternalProcessMBox (OpenMS)
ChromatogramExtractorAlgorithm::ExtractionCoordinates (OpenMS)
F
Factory (OpenMS)
FactoryBase (OpenMS)
FailedAPICall (OpenMS::Exception)
FAIMSHelper (OpenMS)
FakeProcess (OpenMS)
FalseDiscoveryRate (OpenMS)
FASTAContainer (OpenMS)
FASTAContainer< TFI_File > (OpenMS)
FASTAContainer< TFI_Vector > (OpenMS)
FASTAFile::FASTAEntry (OpenMS)
FASTAFile (OpenMS)
Feature (OpenMS)
FeatureFinderAlgorithmMetaboIdent::FeatureCompare (OpenMS)
FeatureFinderIdentificationAlgorithm::FeatureCompare (OpenMS)
AbsoluteQuantitationStandards::featureConcentration (OpenMS)
FeatureDeconvolution (OpenMS)
FeatureDistance (OpenMS)
FeatureEditDialog (OpenMS)
FeatureFileOptions (OpenMS)
FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides (OpenMS)
FeatureFinderAlgorithmMetaboIdent::FeatureFilterQuality (OpenMS)
FeatureFinderIdentificationAlgorithm::FeatureFilterQuality (OpenMS)
FeatureFinder (OpenMS)
FeatureFinderAlgorithm (OpenMS)
FeatureFinderAlgorithmIsotopeWavelet (OpenMS)
FeatureFinderAlgorithmMetaboIdent (OpenMS)
FeatureFinderAlgorithmMRM (OpenMS)
FeatureFinderAlgorithmPicked (OpenMS)
FeatureFinderAlgorithmPickedHelperStructs (OpenMS)
FeatureFinderDefs (OpenMS)
FeatureFinderIdentificationAlgorithm (OpenMS)
FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound (OpenMS)
FeatureFinderMultiplexAlgorithm (OpenMS)
FeatureFindingMetabo (OpenMS)
FeatureGroupingAlgorithm (OpenMS)
FeatureGroupingAlgorithmKD (OpenMS)
FeatureGroupingAlgorithmLabeled (OpenMS)
FeatureGroupingAlgorithmQT (OpenMS)
FeatureGroupingAlgorithmUnlabeled (OpenMS)
FeatureHandle (OpenMS)
FeatureHandle::FeatureHandleMutable_ (OpenMS)
FeatureHypothesis (OpenMS)
FeatureMap (OpenMS)
FeatureMapping (OpenMS)
FeatureMapping::FeatureMappingInfo (OpenMS)
FeatureOpenMS (OpenMS)
FeatureOverlapFilter (OpenMS)
FeatureSummary (OpenMS)
FeatureMapping::FeatureToMs2Indices (OpenMS)
FeatureXMLFile (OpenMS)
FeatureXMLHandler (OpenMS::Internal)
IsotopeWavelet::fi_ (OpenMS)
FIAMSDataProcessor (OpenMS)
FIAMSScheduler (OpenMS)
FidHandler (OpenMS::Internal)
File (OpenMS)
FileEmpty (OpenMS::Exception)
FileHandler (OpenMS)
FileMapping (OpenMS::Internal)
FileNameTooLong (OpenMS::Exception)
FileNotFound (OpenMS::Exception)
FileNotReadable (OpenMS::Exception)
FileNotWritable (OpenMS::Exception)
FileTypeList (OpenMS)
FileTypes (OpenMS)
FileWatcher (OpenMS)
FilterableList (OpenMS::Internal)
FileTypeList::FilterElements_ (OpenMS)
FilterFunctor (OpenMS)
FilterList (OpenMS::Internal)
FineIsotopePatternGenerator (OpenMS)
SiriusAdapterAlgorithm::Fingerid (OpenMS)
Fitter1D (OpenMS)
FlagSet (OpenMS)
FLASHDeconvAlgorithm (OpenMS)
FLASHDeconvFeatureFile (OpenMS)
FLASHDeconvHelperStructs (OpenMS)
FLASHDeconvSpectrumFile (OpenMS)
FLASHDeconvTabWidget (OpenMS::Internal)
FLASHDeconvWizardBase (OpenMS)
FloatDataArray (OpenMS::DataArrays)
RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ (OpenMS::Internal)
FragmentMassError (OpenMS)
FullSwathFileConsumer (OpenMS)
FuzzyStringComparator (OpenMS)
FWHM (OpenMS)
G
GammaDistributionFitter::GammaDistributionFitResult (OpenMS::Math)
GammaDistributionFitter (OpenMS::Math)
GaussFilter (OpenMS)
GaussFilterAlgorithm (OpenMS)
GaussFitter::GaussFitResult (OpenMS::Math)
GaussFitter (OpenMS::Math)
GaussFitter1D (OpenMS)
SignalToNoiseEstimator::GaussianEstimate (OpenMS)
GaussModel (OpenMS)
GaussTraceFitter (OpenMS)
GaussTraceFitter::GaussTraceFunctor (OpenMS)
LevMarqFitter1D::GenericFunctor (OpenMS)
TraceFitter::GenericFunctor (OpenMS)
IDFilter::GetMatchingItems (OpenMS)
IDBoostGraph::GetPosteriorVisitor (OpenMS::Internal)
IDBoostGraph::GetScoreTgTVisitor (OpenMS::Internal)
ConfidenceScoring::GLM_ (OpenMS)
GlobalExceptionHandler (OpenMS::Exception)
GNPSMetaValueFile (OpenMS)
GNPSMGFFile (OpenMS)
GNPSQuantificationFile (OpenMS)
GoodDiffFilter (OpenMS)
Gradient (OpenMS)
GradientVisualizer (OpenMS)
Gravitator (OpenMS)
GridBasedCluster (OpenMS)
GridBasedClustering (OpenMS)
GridFeature (OpenMS)
GridSearch (OpenMS)
GUILock (OpenMS::GUIHelpers)
GUIProgressLoggerImpl (OpenMS)
GumbelDistributionFitter::GumbelDistributionFitResult (OpenMS::Math)
GumbelMaxLikelihoodFitter::GumbelDistributionFitResult (OpenMS::Math)
GumbelDistributionFitter (OpenMS::Math)
GumbelMaxLikelihoodFitter (OpenMS::Math)
GzipIfstream (OpenMS)
GzipInputStream (OpenMS)
H
HasActivationMethod (OpenMS)
IDFilter::HasDecoyAnnotation (OpenMS)
IDFilter::HasGoodScore (OpenMS)
hash< OpenMS::Index > (std)
hash< OpenMS::String > (std)
HashGrid (OpenMS)
NucleicAcidSearchEngine::HasInvalidLength
IDFilter::HasMatchingAccession (OpenMS)
IDFilter::HasMatchingAccessionUnordered (OpenMS)
IDFilter::HasMaxMetaValue (OpenMS)
IDFilter::HasMaxRank (OpenMS)
HasMetaValue (OpenMS)
IDFilter::HasMetaValue (OpenMS)
IDFilter::HasNoHits (OpenMS)
HasPrecursorCharge (OpenMS)
HasScanMode (OpenMS)
HasScanPolarity (OpenMS)
HDF5Connector (OpenMS)
HiddenMarkovModel (OpenMS)
Histogram (OpenMS::Math)
HistogramDialog (OpenMS)
HistogramWidget (OpenMS)
Hit (OpenMS)
ConsensusIDAlgorithm::HitInfo (OpenMS)
HMMState (OpenMS)
HPLC (OpenMS)
HPLCVisualizer (OpenMS)
HyperScore (OpenMS)
I
IBSpectraFile (OpenMS)
IChromatogramsReader (OpenMS::Interfaces)
IChromatogramsWriter (OpenMS::Interfaces)
IDataFrameWriter (OpenSwath)
IDBoostGraph (OpenMS::Internal)
IDConflictResolverAlgorithm (OpenMS)
IDDecoyProbability (OpenMS)
Identification (OpenMS)
IdentificationData (OpenMS)
IdentificationDataConverter (OpenMS)
IdentificationHit (OpenMS)
Ms2IdentificationRate::IdentificationRateData (OpenMS)
IDRipper::IdentificationRuns (OpenMS)
IdentificationSummary (OpenMS)
IdentifiedCompound (OpenMS::IdentificationDataInternal)
IdentifiedMolecule (OpenMS::IdentificationDataInternal)
IdentifiedSequence (OpenMS::IdentificationDataInternal)
IDFilter (OpenMS)
IDMapper (OpenMS)
IDMergerAlgorithm (OpenMS)
MzTab::IDMzTabStream (OpenMS)
IDRipper (OpenMS)
IDScoreGetterSetter (OpenMS)
IDScoreSwitcherAlgorithm (OpenMS)
IdXMLFile (OpenMS)
IFeature (OpenSwath)
IllegalArgument (OpenMS::Exception)
IllegalPosition (OpenMS::Exception)
IllegalSelfOperation (OpenMS::Exception)
IllegalTreeOperation (OpenMS::Exception)
ILPDCWrapper (OpenMS)
IMDataConverter (OpenMS)
MobilityPeak2D::IMLess (OpenMS)
MSSpectrum::IMLess (OpenMS)
IMRMFeature (OpenSwath)
IMSAlphabet (OpenMS::ims)
IMSAlphabetParser (OpenMS::ims)
IMSAlphabetTextParser (OpenMS::ims)
IMSDataConsumer (OpenMS::Interfaces)
IMSElement (OpenMS::ims)
IMSIsotopeDistribution (OpenMS::ims)
IMTypes (OpenMS)
IncludeExcludeTarget (OpenMS)
IncompatibleIterators (OpenMS::Exception)
IndentedStream (OpenMS)
Index (OpenMS)
IndexedMzMLDecoder (OpenMS)
IndexedMzMLFileLoader (OpenMS)
IndexedMzMLHandler (OpenMS::Internal)
FeatureHandle::IndexLess (OpenMS)
IndexOverflow (OpenMS::Exception)
IndexUnderflow (OpenMS::Exception)
INIFileEditorWindow (OpenMS)
InIntensityRange (OpenMS)
INIUpdater (OpenMS)
InMSLevelRange (OpenMS)
InMzRange (OpenMS)
InPrecursorMZRange (OpenMS)
InputFile (OpenMS::IdentificationDataInternal)
InputFile (OpenMS)
InputFileList (OpenMS::Internal)
FuzzyStringComparator::InputLine (OpenMS)
InRTRange (OpenMS)
InspectInfile (OpenMS)
InspectOutfile (OpenMS)
Instrument (OpenMS)
Instrument (OpenMS::TargetedExperimentHelper)
InstrumentSettings (OpenMS)
InstrumentSettingsVisualizer (OpenMS)
InstrumentVisualizer (OpenMS)
ClusterFunctor::InsufficientInput (OpenMS)
IntegerDataArray (OpenMS::DataArrays)
IntegerMassDecomposer (OpenMS::ims)
IntensityBalanceFilter (OpenMS)
IntensityIteratorWrapper (OpenMS::Internal)
ChromatogramPeak::IntensityLess (OpenMS)
MobilityPeak1D::IntensityLess (OpenMS)
MobilityPeak2D::IntensityLess (OpenMS)
Peak1D::IntensityLess (OpenMS)
Peak2D::IntensityLess (OpenMS)
InternalCalibration (OpenMS)
InternalToolError (OpenMS::Exception)
InterpolationModel (OpenMS)
TransformationModelInterpolated::Interpolator (OpenMS)
Interpretation (OpenMS::TargetedExperimentHelper)
InvalidIterator (OpenMS::Exception)
InvalidParameter (OpenMS::Exception)
InvalidRange (OpenMS::Exception)
InvalidSize (OpenMS::Exception)
InvalidValue (OpenMS::Exception)
IOException (OpenMS::Exception)
TOPPASToolVertex::IOInfo (OpenMS)
IonDetector (OpenMS)
IonDetectorVisualizer (OpenMS)
IonIdentityMolecularNetworking (OpenMS)
IonMobilityScoring (OpenMS)
IonSource (OpenMS)
IonSourceVisualizer (OpenMS)
IPeptideIds (OpenMS)
ProteinResolver::ISDGroup (OpenMS)
IsEmptySpectrum (OpenMS)
IDScoreGetterSetter::IsHitType (OpenMS)
IDScoreGetterSetter::IsIDType (OpenMS)
ISignalToNoise (OpenSwath)
IsInCollisionEnergyRange (OpenMS)
IsInIsolationWindow (OpenMS)
IsInIsolationWindowSizeRange (OpenMS)
IsobaricChannelExtractor (OpenMS)
IsobaricQuantitationMethod::IsobaricChannelInformation (OpenMS)
IsobaricIsotopeCorrector (OpenMS)
IsobaricNormalizer (OpenMS)
IsobaricQuantifier (OpenMS)
IsobaricQuantifierStatistics (OpenMS)
IsobaricQuantitationMethod (OpenMS)
IsoSpecGeneratorWrapper (OpenMS)
IsoSpecOrderedGeneratorWrapper (OpenMS)
IsoSpecThresholdGeneratorWrapper (OpenMS)
IsoSpecThresholdWrapper (OpenMS)
IsoSpecTotalProbGeneratorWrapper (OpenMS)
IsoSpecTotalProbWrapper (OpenMS)
IsoSpecWrapper (OpenMS)
IsotopeCluster (OpenMS)
IsotopeDiffFilter (OpenMS)
IsotopeDistribution (OpenMS)
IsotopeDistributionCache (OpenMS)
IsotopeFitter1D (OpenMS)
IsotopeLabelingMDVs (OpenMS)
IsotopeMarker (OpenMS)
IsotopeModel (OpenMS)
FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern (OpenMS)
IsotopePatternGenerator (OpenMS)
IsotopeWavelet (OpenMS)
IsotopeWaveletTransform (OpenMS)
ISpectraReader (OpenMS::Interfaces)
ISpectraWriter (OpenMS::Interfaces)
ISpectrumAccess (OpenSwath)
IsZoomSpectrum (OpenMS)
Iterator
AASequence::Iterator (OpenMS)
HashGrid::Iterator (OpenMS)
NASequence::Iterator (OpenMS)
IteratorWrapper (OpenMS::IdentificationDataInternal)
ITransitionGroup (OpenSwath)
ItraqConstants (OpenMS)
ItraqEightPlexQuantitationMethod (OpenMS)
ItraqFourPlexQuantitationMethod (OpenMS)
J
JavaInfo (OpenMS)
K
KDTree (KDTree)
KDTreeFeatureMaps (OpenMS)
KDTreeFeatureNode (OpenMS)
KroenikFile (OpenMS)
L
MultiplexDeltaMassesGenerator::Label (OpenMS)
LabeledPairFinder (OpenMS)
IDBoostGraph::LabelVisitor (OpenMS::Internal)
LayerAnnotatorAMS (OpenMS)
LayerAnnotatorBase (OpenMS)
LayerAnnotatorOSW (OpenMS)
LayerAnnotatorPeptideID (OpenMS)
LayerData1DBase (OpenMS)
LayerData1DChrom (OpenMS)
LayerData1DIonMobility (OpenMS)
LayerData1DPeak (OpenMS)
LayerDataBase (OpenMS)
LayerDataChrom (OpenMS)
LayerDataConsensus (OpenMS)
LayerDataDefs (OpenMS)
LayerDataFeature (OpenMS)
LayerDataIdent (OpenMS)
LayerDataIonMobility (OpenMS)
LayerDataPeak (OpenMS)
LayerListView (OpenMS)
LayerStack (OpenMS)
LayerStatistics (OpenMS)
LayerStatisticsConsensusMap (OpenMS)
LayerStatisticsDialog (OpenMS)
LayerStatisticsFeatureMap (OpenMS)
LayerStatisticsIdent (OpenMS)
LayerStatisticsPeakMap (OpenMS)
LayerStoreData (OpenMS)
LayerStoreDataConsensusMapAll (OpenMS)
LayerStoreDataConsensusMapVisible (OpenMS)
LayerStoreDataFeatureMapAll (OpenMS)
LayerStoreDataFeatureMapVisible (OpenMS)
LayerStoreDataIdentAll (OpenMS)
LayerStoreDataIdentVisible (OpenMS)
LayerStoreDataPeakMapAll (OpenMS)
LayerStoreDataPeakMapVisible (OpenMS)
LevMarqFitter1D (OpenMS)
LightCompound (OpenSwath)
LightModification (OpenSwath)
LightProtein (OpenSwath)
LightTargetedExperiment (OpenSwath)
LightTransition (OpenSwath)
LinearInterpolation (OpenMS::Math)
LinearRegression (OpenMS::Math)
LinearRegressionWithoutIntercept (OpenMS::Math)
LinearResampler (OpenMS)
LinearResamplerAlign (OpenMS)
ListEditor (OpenMS)
ListEditorDelegate (OpenMS::Internal)
ListFilterDialog (OpenMS)
ListTable (OpenMS::Internal)
ListUtils (OpenMS)
InternalCalibration::LockMass (OpenMS)
LogStreamBuf::LogCacheStruct (OpenMS::Logger)
LogConfigHandler (OpenMS)
FLASHDeconvHelperStructs::LogMzPeak (OpenMS)
LogStream (OpenMS::Logger)
LogStreamBuf (OpenMS::Logger)
LogStreamNotifier (OpenMS::Logger)
LogWindow (OpenMS)
SimpleTSGXLMS::LossIndex (OpenMS)
TheoreticalSpectrumGeneratorXLMS::LossIndex (OpenMS)
LowessSmoothing (OpenMS)
LPWrapper (OpenMS)
PercolatorFeatureSetHelper::lq_PeptideEvidence (OpenMS)
PercolatorFeatureSetHelper::lq_ProteinHit (OpenMS)
M
MapAlignmentAlgorithmIdentification (OpenMS)
MapAlignmentAlgorithmKD (OpenMS)
MapAlignmentAlgorithmPoseClustering (OpenMS)
MapAlignmentAlgorithmSpectrumAlignment (OpenMS)
MapAlignmentAlgorithmTreeGuided (OpenMS)
MapAlignmentEvaluationAlgorithm (OpenMS)
MapAlignmentEvaluationAlgorithmPrecision (OpenMS)
MapAlignmentEvaluationAlgorithmRecall (OpenMS)
MapAlignmentTransformer (OpenMS)
MapConversion (OpenMS)
ProteinIdentification::Mapping (OpenMS)
AccurateMassSearchEngine::MappingEntry_ (OpenMS)
MappingParam (OpenMS::Internal)
ConsensusFeature::MapsLess (OpenMS)
ModifiedPeptideGenerator::MapToResidueType (OpenMS)
MapUtilities (OpenMS)
MarkerMower (OpenMS)
MascotGenericFile (OpenMS)
MascotInfile (OpenMS)
MascotRemoteQuery (OpenMS)
MascotXMLFile (OpenMS)
MascotXMLHandler (OpenMS::Internal)
MassAnalyzer (OpenMS)
MassAnalyzerVisualizer (OpenMS)
MassDecomposer (OpenMS::ims)
MassDecomposition (OpenMS)
MassDecompositionAlgorithm (OpenMS)
MassExplainer (OpenMS)
FLASHDeconvHelperStructs::MassFeature (OpenMS)
MassFeatureTrace (OpenMS)
IMSAlphabet::MassSortingCriteria_ (OpenMS::ims)
FeatureFinderAlgorithmPickedHelperStructs::MassTrace (OpenMS)
MassTrace (OpenMS)
FeatureFinderAlgorithmMetaboIdent::MassTraceBounds (OpenMS)
MasstraceCorrelator (OpenMS)
MassTraceDetection (OpenMS)
FeatureFinderAlgorithmPickedHelperStructs::MassTraces (OpenMS)
TargetedSpectraExtractor::Match (OpenMS)
MatchedIterator (OpenMS)
Matrix (Eigen)
Matrix (OpenMS)
MaxLikeliFitter1D (OpenMS)
mean_and_stddev (OpenSwath)
SysInfo::MemUsage (OpenMS)
MessagePasserFactory (OpenMS::Internal)
MetaboliteFeatureDeconvolution (OpenMS)
MetaboliteSpectralMatching (OpenMS)
MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping (OpenMS)
MetaboTargetedAssay (OpenMS)
MetaboTargetedTargetDecoy (OpenMS)
MetaDataBrowser (OpenMS)
MetaInfo (OpenMS)
MetaInfoDescription (OpenMS)
MetaInfoDescriptionVisualizer (OpenMS)
MetaInfoInterface (OpenMS)
MetaInfoInterfaceUtils (OpenMS)
MetaInfoRegistry (OpenMS)
MetaInfoVisualizer (OpenMS)
MetaKeyGetter (OpenMS::Detail)
MinimumDistance (OpenMS)
MissedCleavages (OpenMS)
MissingInformation (OpenMS::Exception)
MobilityPeak1D::MobilityLess (OpenMS)
MobilityPeak1D (OpenMS)
MobilityPeak2D (OpenMS)
Mobilogram (OpenMS)
MockFeature (OpenSwath)
MockMRMFeature (OpenSwath)
MockSignalToNoise (OpenSwath)
MockTransitionGroup (OpenSwath)
TraceFitter::ModelData (OpenMS)
ModelDescription (OpenMS)
Modification (OpenMS)
Peptide::Modification (OpenMS::TargetedExperimentHelper)
ModificationDefinition (OpenMS)
ModificationDefinitionsSet (OpenMS)
MzIdentMLDOMHandler::ModificationParam (OpenMS::Internal)
ModificationsDB
ModificationsDB (OpenMS)
ModificationVisualizer (OpenMS)
ModifiedNASequenceGenerator (OpenMS)
ModifiedPeptideGenerator (OpenMS)
IdentificationData::ModifyMultiIndexAddProcessingStep (OpenMS)
IdentificationData::ModifyMultiIndexAddScore (OpenMS)
IdentificationData::ModifyMultiIndexRemoveParentMatches (OpenMS)
MorpheusScore (OpenMS)
MorphologicalFilter (OpenMS)
MQExporterHelper::MQCommonOutputs
MQEvidence
MQExporterHelper
MQMsms
MRMAssay (OpenMS)
MRMBatchFeatureSelector (OpenMS)
MRMDecoy (OpenMS)
MRMFeature (OpenMS)
MRMFeatureFilter (OpenMS)
MRMFeatureFinderScoring (OpenMS)
MRMFeatureOpenMS (OpenMS)
MRMFeaturePicker (OpenMS)
MRMFeaturePickerFile (OpenMS)
MRMFeatureQC (OpenMS)
MRMFeatureQCFile (OpenMS)
MRMFeatureSelector (OpenMS)
MRMFeatureSelector_test (OpenMS)
MRMFeatureSelectorQMIP (OpenMS)
MRMFeatureSelectorScore (OpenMS)
MRMFragmentSelection (OpenMS)
MRMIonSeries (OpenMS)
MRMMapping (OpenMS)
MRMRTNormalizer (OpenMS)
MRMScoring (OpenSwath)
MRMTransitionGroup (OpenMS)
MRMTransitionGroupPicker (OpenMS)
MS2File (OpenMS)
Ms2IdentificationRate (OpenMS)
Ms2SpectrumStats (OpenMS)
MSChromatogram (OpenMS)
MSDataAggregatingConsumer (OpenMS)
MSDataCachedConsumer (OpenMS)
MSDataChainingConsumer (OpenMS)
MSDataSqlConsumer (OpenMS)
MSDataStoringConsumer (OpenMS)
MSDataTransformingConsumer (OpenMS)
MSDataWritingConsumer (OpenMS)
ProteinResolver::MSDGroup (OpenMS)
MSExperiment (OpenMS)
ExperimentalDesign::MSFileSectionEntry (OpenMS)
MsInspectFile (OpenMS)
MSNumpressCoder (OpenMS)
MSPFile (OpenMS)
MSPGenericFile (OpenMS)
MSPGenericFile_friend (OpenMS)
MSQuantifications (OpenMS)
MSSpectrum (OpenMS)
MSstatsFile (OpenMS)
MSstatsFile::MSstatsLine_ (OpenMS)
MSstatsFile::MSstatsTMTLine_ (OpenMS)
MultiGradient (OpenMS)
MultiGradientSelector (OpenMS)
MultiplexClustering (OpenMS)
MultiplexDeltaMasses (OpenMS)
MultiplexDeltaMassesGenerator (OpenMS)
MultiplexClustering::MultiplexDistance (OpenMS)
MultiplexFilteredMSExperiment (OpenMS)
MultiplexFilteredPeak (OpenMS)
MultiplexFiltering (OpenMS)
MultiplexFilteringCentroided (OpenMS)
MultiplexFilteringProfile (OpenMS)
MultiplexIsotopicPeakPattern (OpenMS)
MultiplexSatelliteCentroided (OpenMS)
MultiplexSatelliteProfile (OpenMS)
MzCalibration (OpenMS)
MzDataFile (OpenMS)
MzDataHandler (OpenMS::Internal)
MzDataValidator (OpenMS::Internal)
MzIdentMLDOMHandler (OpenMS::Internal)
MzIdentMLFile (OpenMS)
MzIdentMLHandler (OpenMS::Internal)
MzIdentMLValidator (OpenMS::Internal)
MobilityPeak2D::MZLess (OpenMS)
MSChromatogram::MZLess (OpenMS)
Peak1D::MZLess (OpenMS)
Peak2D::MZLess (OpenMS)
MzMLFile (OpenMS)
MzMLHandler (OpenMS::Internal)
MzMLHandlerHelper (OpenMS::Internal)
MzMLSpectrumDecoder (OpenMS)
MzMLSqliteHandler (OpenMS::Internal)
MzMLSqliteSwathHandler (OpenMS::Internal)
MzMLSwathFileConsumer (OpenMS)
MzMLValidator (OpenMS::Internal)
MzQCFile (OpenMS)
MzQuantMLFile (OpenMS)
MzQuantMLHandler (OpenMS::Internal)
MzQuantMLValidator (OpenMS::Internal)
MzTab (OpenMS)
MzTabAssayMetaData (OpenMS)
MzTabBase (OpenMS)
MzTabBoolean (OpenMS)
MzTabContactMetaData (OpenMS)
MzTabCVMetaData (OpenMS)
MzTabDouble (OpenMS)
MzTabDoubleList (OpenMS)
MzTabFile (OpenMS)
MzTabInstrumentMetaData (OpenMS)
MzTabInteger (OpenMS)
MzTabIntegerList (OpenMS)
MzTabM (OpenMS)
MzTabMAssayMetaData (OpenMS)
MzTabMDatabaseMetaData (OpenMS)
MzTabMetaData (OpenMS)
MzTabMFile (OpenMS)
MzTabMMetaData (OpenMS)
MzTabMMSRunMetaData (OpenMS)
MzTabModification (OpenMS)
MzTabModificationList (OpenMS)
MzTabModificationMetaData (OpenMS)
MzTabMSmallMoleculeEvidenceSectionRow (OpenMS)
MzTabMSmallMoleculeFeatureSectionRow (OpenMS)
MzTabMSmallMoleculeSectionRow (OpenMS)
MzTabMSRunMetaData (OpenMS)
MzTabMStudyVariableMetaData (OpenMS)
MzTabNucleicAcidSectionRow (OpenMS)
MzTabOligonucleotideSectionRow (OpenMS)
MzTabOSMSectionRow (OpenMS)
MzTabParameter (OpenMS)
MzTabParameterList (OpenMS)
MzTabPeptideSectionRow (OpenMS)
MzTabProteinSectionRow (OpenMS)
MzTabPSMSectionRow (OpenMS)
MzTabSampleMetaData (OpenMS)
MzTabSmallMoleculeSectionRow (OpenMS)
MzTabSoftwareMetaData (OpenMS)
MzTabSpectraRef (OpenMS)
MzTabString (OpenMS)
MzTabStringList (OpenMS)
MzTabStudyVariableMetaData (OpenMS)
MZTrafoModel (OpenMS)
MzXMLFile (OpenMS)
MzXMLHandler (OpenMS::Internal)
N
ReactionMonitoringTransition::NameLess (OpenMS)
NASequence (OpenMS)
SplineInterpolatedPeaks::Navigator (OpenMS)
NeedlemanWunsch (OpenMS)
QTCluster::Neighbor (OpenMS)
NetworkGetRequest (OpenMS)
NeutralLossDiffFilter (OpenMS)
NeutralLossMarker (OpenMS)
NLargest (OpenMS)
SignalToNoiseEstimatorMedianRapid::NoiseEstimator (OpenMS)
_Alloc_base::NoLeakAlloc (KDTree)
NonNegativeLeastSquaresSolver (OpenMS)
NoopMSDataConsumer (OpenMS)
NoopMSDataWritingConsumer (OpenMS)
Normalizer (OpenMS)
FeatureFinderDefs::NoSuccessor (OpenMS)
NotImplemented (OpenMS::Exception)
NucleicAcidSearchEngine
NucleicAcidSpectrumGenerator (OpenMS)
NullPointer (OpenMS::Exception)
MSNumpressCoder::NumpressConfig (OpenMS)
O
Observation (OpenMS::IdentificationDataInternal)
ObservationMatch (OpenMS::IdentificationDataInternal)
ObservationMatchGroup (OpenMS::IdentificationDataInternal)
OfflinePrecursorIonSelection (OpenMS)
OMSFile (OpenMS)
OMSFileLoad (OpenMS::Internal)
OMSFileStore (OpenMS::Internal)
OMSSACSVFile (OpenMS)
OMSSAXMLFile (OpenMS)
OnDiscMSExperiment (OpenMS)
OpenMSBuildInfo (OpenMS::Internal)
OpenMSLineEdit (OpenMS::Internal)
OpenMSOSInfo (OpenMS::Internal)
OpenPepXLAlgorithm (OpenMS)
OpenPepXLLFAlgorithm (OpenMS)
OpenSwath_Ind_Scores (OpenMS)
OpenSwath_Scores (OpenMS)
OpenSwath_Scores_Usage (OpenMS)
OpenSwathCalibrationWorkflow (OpenMS)
OpenSwathDataAccessHelper (OpenMS)
OpenSwathHelper (OpenMS)
OpenSwathOSWWriter (OpenMS)
OpenSwathScoring (OpenMS)
OpenSwathTSVWriter (OpenMS)
OpenSwathWorkflow (OpenMS)
OpenSwathWorkflowBase (OpenMS)
OpenSwathWorkflowSonar (OpenMS)
OptimizePeakDeconvolution (OpenMS)
OptimizePick (OpenMS)
OptimizePick::OptPeakFunctor (OpenMS)
OPXLDataStructs (OpenMS)
OPXLHelper (OpenMS)
OPXLSpectrumProcessingAlgorithms (OpenMS)
OSBinaryDataArray (OpenSwath)
OSChromatogram (OpenSwath)
OSChromatogramMeta (OpenSwath)
OSSpectrum (OpenSwath)
OSSpectrumMeta (OpenSwath)
OSWData (OpenMS)
OSWFile (OpenMS)
OSWHierarchy (OpenMS)
OSWIndexTrace (OpenMS)
OSWPeakGroup (OpenMS)
OSWPeptidePrecursor (OpenMS)
OSWProtein (OpenMS)
OSWTransition (OpenMS)
OutOfGrid (OpenMS::Exception)
OutOfMemory (OpenMS::Exception)
OutOfRange (OpenMS::Exception)
OutputDirectory (OpenMS)
OverlapDetector (OpenMS::GUIHelpers)
P
Painter1DBase (OpenMS)
Painter1DChrom (OpenMS)
Painter1DIonMobility (OpenMS)
Painter1DPeak (OpenMS)
Painter2DBase (OpenMS)
Painter2DChrom (OpenMS)
Painter2DConsensus (OpenMS)
Painter2DFeature (OpenMS)
Painter2DIdent (OpenMS)
Painter2DIonMobility (OpenMS)
Painter2DPeak (OpenMS)
PainterBase (OpenMS)
pair_hash (OpenSwath::Scoring)
OfflinePrecursorIonSelection::PairComparatorSecondElement (OpenMS)
AreaIterator::Param (OpenMS::Internal)
Param (OpenMS)
ParamCTDFile (OpenMS)
ParamCWLFile (OpenMS)
ParamEditor (OpenMS)
ParamEditorDelegate (OpenMS::Internal)
Param::ParamEntry (OpenMS)
ParameterInformation (OpenMS)
SiriusAdapterAlgorithm::ParameterModifier (OpenMS)
SiriusAdapterAlgorithm::ParameterSection (OpenMS)
Param::ParamIterator (OpenMS)
Param::ParamNode (OpenMS)
ParamTree (OpenMS::Internal)
ParamValue (OpenMS)
ParamXMLFile (OpenMS)
ParamXMLHandler (OpenMS::Internal)
ParentGroup (OpenMS::IdentificationDataInternal)
ParentGroupSet (OpenMS::IdentificationDataInternal)
ParentMatch (OpenMS::IdentificationDataInternal)
ParentPeakMower (OpenMS)
ParentSequence (OpenMS::IdentificationDataInternal)
ParseError (OpenMS::Exception)
ParseError
SiriusAdapterAlgorithm::Passatutto (OpenMS)
IMSIsotopeDistribution::Peak (OpenMS::ims)
Peak1D (OpenMS)
Peak2D (OpenMS)
PeakAlignment (OpenMS)
PeptideHit::PeakAnnotation (OpenMS)
PeakIntegrator::PeakArea (OpenMS)
PeakPickerCWT::PeakArea_ (OpenMS)
PeakIntegrator::PeakBackground (OpenMS)
PeakPickerHiRes::PeakBoundary (OpenMS)
PeakCandidate (OpenMS)
PeakPickerMaxima::PeakCandidate (OpenMS)
PeakFileOptions (OpenMS)
PeakGroup (OpenMS)
PeakIndex (OpenMS)
PeakIntegrator (OpenMS)
PeakMarker (OpenMS)
PeakPickerCWT (OpenMS)
PeakPickerHiRes (OpenMS)
PeakPickerIterative (OpenMS)
PeakPickerMaxima (OpenMS)
PeakPickerMRM (OpenMS)
PeakPickerSH (OpenMS)
PeakShape (OpenMS)
PeakIntegrator::PeakShapeMetrics (OpenMS)
PeakSpectrumCompareFunctor (OpenMS)
PeakTypeEstimator (OpenMS)
PeakWidthEstimator (OpenMS)
PenaltyFactors (OpenMS::OptimizationFunctions)
PenaltyFactorsIntensity (OpenMS::OptimizationFunctions)
IdentificationDataConverter::PepIDCompare (OpenMS)
PepNovoInfile (OpenMS)
PepNovoOutfile (OpenMS)
Peptide (OpenMS::TargetedExperimentHelper)
Peptide (OpenSwath)
PeptideAndProteinQuant (OpenMS)
FeatureFinderIdentificationAlgorithm::PeptideCompare (OpenMS)
PeptideCompound (OpenMS::TargetedExperimentHelper)
PeptideAndProteinQuant::PeptideData (OpenMS)
IDFilter::PeptideDigestionFilter (OpenMS)
ProteinResolver::PeptideEntry (OpenMS)
MzIdentMLDOMHandler::PeptideEvidence (OpenMS::Internal)
PeptideEvidence (OpenMS)
PeptideHit (OpenMS)
PeptideHitVisualizer (OpenMS)
PeptideIdentification (OpenMS)
PeptideIdentificationVisualizer (OpenMS)
OPXLHelper::PeptideIDScoreComparator (OpenMS)
PeptideIndexing (OpenMS)
PeptideMass (OpenMS)
PeptideProteinResolution (OpenMS)
PeptideHit::PepXMLAnalysisResult (OpenMS)
PepXMLFile (OpenMS)
PepXMLFileMascot (OpenMS)
OSWFile::PercolatorFeature (OpenMS)
PercolatorFeatureSetHelper (OpenMS)
PercolatorInfile (OpenMS)
PercolatorOutfile (OpenMS)
PlainMSDataWritingConsumer (OpenMS)
Plot1DCanvas (OpenMS)
Plot1DGoToDialog (OpenMS)
Plot1DPrefDialog (OpenMS::Internal)
Plot1DWidget (OpenMS)
Plot2DCanvas (OpenMS)
Plot2DGoToDialog (OpenMS)
Plot2DPrefDialog (OpenMS::Internal)
Plot2DWidget (OpenMS)
Plot3DCanvas (OpenMS)
Plot3DOpenGLCanvas (OpenMS)
Plot3DPrefDialog (OpenMS::Internal)
Plot3DWidget (OpenMS)
PlotCanvas (OpenMS)
PlotWidget (OpenMS)
PoseClusteringAffineSuperimposer (OpenMS)
PoseClusteringShiftSuperimposer (OpenMS)
ChromatogramPeak::PositionLess (OpenMS)
MobilityPeak1D::PositionLess (OpenMS)
MobilityPeak2D::PositionLess (OpenMS)
Peak1D::PositionLess (OpenMS)
Peak2D::PositionLess (OpenMS)
PeakShape::PositionLess (OpenMS)
Postcondition (OpenMS::Exception)
PosteriorErrorProbabilityModel (OpenMS::Math)
PpmTrait (OpenMS)
FLASHDeconvHelperStructs::PrecalculatedAveragine (OpenMS)
PrecisionWrapper (OpenMS)
Precondition (OpenMS::Exception)
Precursor (OpenMS)
PrecursorCorrection (OpenMS)
NucleicAcidSearchEngine::PrecursorInfo
PrecursorMassComparator (OpenMS)
PrecursorPurity (OpenMS)
PrecursorVisualizer (OpenMS)
SimpleSVM::Prediction (OpenMS)
Prediction (OpenMS::TargetedExperimentHelper)
FuzzyStringComparator::PrefixInfo_ (OpenMS)
OPXLDataStructs::PreprocessedPairSpectra (OpenMS)
SiriusAdapterAlgorithm::Preprocessing (OpenMS)
IDBoostGraph::PrintAddressVisitor (OpenMS::Internal)
ProbablePhosphoSites (OpenMS)
ProcessingSoftware (OpenMS::IdentificationDataInternal)
ProcessingStep (OpenMS::IdentificationDataInternal)
Product (OpenMS)
ProductModel (OpenMS)
ProductModel< 2 > (OpenMS)
ReactionMonitoringTransition::ProductMZLess (OpenMS)
ProductVisualizer (OpenMS)
ProgressLogger (OpenMS)
ProgressLogger::ProgressLoggerImpl (OpenMS)
SiriusAdapterAlgorithm::Project (OpenMS)
LayerDataDefs::ProjectionData (OpenMS)
ProteaseDB (OpenMS)
ProteaseDigestion (OpenMS)
Protein (OpenMS::TargetedExperimentHelper)
Protein (OpenSwath)
PeptideAndProteinQuant::ProteinData (OpenMS)
ProteinResolver::ProteinEntry (OpenMS)
IDBoostGraph::ProteinGroup (OpenMS::Internal)
ProteinIdentification::ProteinGroup (OpenMS)
ProteinHit (OpenMS)
ProteinHit::ProteinHitAccessionHash (OpenMS)
ProteinHit::ProteinHitPtrAccessionHash (OpenMS)
ProteinHitVisualizer (OpenMS)
ProteinIdentification (OpenMS)
ProteinIdentificationVisualizer (OpenMS)
ProteinInference (OpenMS)
OPXLDataStructs::ProteinProteinCrossLink (OpenMS)
ProteinResolver (OpenMS)
ProtonDistributionModel (OpenMS)
ProtXMLFile (OpenMS)
PScore (OpenMS)
HyperScore::PSMDetail (OpenMS)
PSMExplainedIonCurrent (OpenMS)
PSProteinInference (OpenMS)
PTMXMLFile (OpenMS)
PTMXMLHandler (OpenMS::Internal)
Publication (OpenMS::TargetedExperimentHelper)
IsobaricChannelExtractor::PuritySate_ (OpenMS)
PrecursorPurity::PurityScores (OpenMS)
PythonInfo (OpenMS)
PythonModuleRequirement (OpenMS::Internal)
PythonSelector (OpenMS::Internal)
Q
QApplication
QApplicationTOPP (OpenMS)
QCBase (OpenMS)
QcMLFile (OpenMS)
QDate
QDialog
QFileSystemWatcher
QGraphicsItem
QGraphicsScene
QGraphicsView
QItemDelegate
QLineEdit
QListWidget
QMainWindow
QMdiArea
QObject
QOpenGLFunctions_2_0
QOpenGLWidget
QProcess
Qscore (OpenMS)
QTabBar
QTableWidget
QTabWidget
QTCluster (OpenMS)
QTClusterFinder (OpenMS)
QTextEdit
QTreeWidget
QuadraticRegression (OpenMS::Math)
BaseFeature::QualityLess (OpenMS)
QcMLFile::QualityParameter (OpenMS)
QuantitativeExperimentalDesign (OpenMS)
Qvalue (OpenMS)
QWidget
R
RAIICleanup (OpenMS)
RandomShuffler (OpenMS::Math)
Range (OpenMS)
RangeBase (OpenMS)
RangeIntensity (OpenMS)
RangeManager (OpenMS)
RangeManagerContainer (OpenMS)
RangeMobility (OpenMS)
RangeMZ (OpenMS)
RangeRT (OpenMS)
RangeStats (OpenMS)
RangeStatsType (OpenMS)
PeptideHit::RankLess (OpenMS)
RANSAC (OpenMS::Math)
RansacModel (OpenMS::Math)
RansacModelLinear (OpenMS::Math)
RansacModelQuadratic (OpenMS::Math)
RANSACParam (OpenMS::Math)
ConsensusFeature::Ratio (OpenMS)
ReactionMonitoringTransition (OpenMS)
real_policies (boost::spirit::qi)
StringUtilsHelper::real_policies_NANfixed_ (OpenMS)
RealMassDecomposer (OpenMS::ims)
RecentFilesMenu (OpenMS)
IdentificationData::RefTranslator (OpenMS)
RefVariant
RegularSwathFileConsumer (OpenMS)
Base64::Reinterpreter32_ (OpenMS)
Base64::Reinterpreter64_ (OpenMS)
RequiredParameterNotGiven (OpenMS::Exception)
Residue (OpenMS)
ResidueDB (OpenMS)
ResidueDB
ResidueModification (OpenMS)
ResidueModification
ProteinResolver::ResolverResult (OpenMS)
DecoyHelper::Result (OpenMS)
FalseDiscoveryRate::DecoyStringHelper::Result (OpenMS)
FeatureSummary::Result (OpenMS)
IdentificationSummary::Result (OpenMS)
MorpheusScore::Result (OpenMS)
TIC::Result (OpenMS)
RetentionTime (OpenMS::TargetedExperimentHelper)
Ribonucleotide (OpenMS)
RibonucleotideDB (OpenMS)
RichPeak2D (OpenMS)
IDRipper::RipFileContent (OpenMS)
IDRipper::RipFileIdentifier (OpenMS)
IDRipper::RipFileIdentifierIdxComparator (OpenMS)
RNaseDB (OpenMS)
RNaseDigestion (OpenMS)
RNPxlFragmentAnnotationHelper (OpenMS::Internal)
RNPxlMarkerIonExtractor (OpenMS)
RNPxlModificationMassesResult (OpenMS)
RNPxlModificationsGenerator (OpenMS)
RNPxlReport (OpenMS)
RNPxlReportRow (OpenMS)
RNPxlReportRowHeader (OpenMS)
ROCCurve (OpenMS::Math)
MzTabNucleicAcidSectionRow::RowCompare (OpenMS)
MzTabOligonucleotideSectionRow::RowCompare (OpenMS)
MzTabOSMSectionRow::RowCompare (OpenMS)
MzTabPeptideSectionRow::RowCompare (OpenMS)
MzTabProteinSectionRow::RowCompare (OpenMS)
MzTabPSMSectionRow::RowCompare (OpenMS)
RTAlignment (OpenMS)
ChromatogramPeak::RTLess (OpenMS)
Mobilogram::RTLess (OpenMS)
MSSpectrum::RTLess (OpenMS)
MZTrafoModel::RTLess (OpenMS)
Peak2D::RTLess (OpenMS)
OSSpectrumMeta::RTLess (OpenSwath)
ConfidenceScoring::RTNorm_ (OpenMS)
FeatureFinderIdentificationAlgorithm::RTRegion (OpenMS)
AbsoluteQuantitationStandards::runConcentration (OpenMS)
RWrapper (OpenMS)
S
Sample (OpenMS)
ExperimentalDesign::SampleSection (OpenMS)
SampleTreatment (OpenMS)
SampleVisualizer (OpenMS)
SaveImageDialog (OpenMS)
SavitzkyGolayFilter (OpenMS)
Scaler (OpenMS)
Ms2SpectrumStats::ScanEvent (OpenMS)
ScanWindow (OpenMS)
ScanWindowVisualizer (OpenMS)
ScoredProcessingResult (OpenMS::IdentificationDataInternal)
PeptideHit::ScoreLess (OpenMS)
ProteinHit::ScoreLess (OpenMS)
PeptideHit::ScoreMore (OpenMS)
ProteinHit::ScoreMore (OpenMS)
ScoreToTgtDecLabelPairs (OpenMS)
ScoreType (OpenMS::IdentificationDataInternal)
SearchEngineBase (OpenMS)
ProteinIdentification::SearchParameters (OpenMS)
FeatureFinderAlgorithmPickedHelperStructs::Seed (OpenMS)
SeedListGenerator (OpenMS)
MRMFeatureSelector::SelectorParameters (OpenMS)
SpectraIDViewTab::SelfResizingTableView_ (OpenMS)
SemanticValidator (OpenMS::Internal)
PeptideHit::SequenceLessComparator (OpenMS)
SequestInfile (OpenMS)
SequestOutfile (OpenMS)
IDBoostGraph::SetPosteriorVisitor (OpenMS::Internal)
shared_xerces_ptr (OpenMS::Internal)
SignalProvider (OpenMS)
SignalToNoiseEstimator (OpenMS)
SignalToNoiseEstimatorMeanIterative (OpenMS)
SignalToNoiseEstimatorMedian (OpenMS)
SignalToNoiseEstimatorMedianRapid (OpenMS)
SignalToNoiseOpenMS (OpenMS)
SimpleOpenMSSpectraFactory (OpenMS)
SimplePairFinder (OpenMS)
SimpleTSGXLMS::SimplePeak (OpenMS)
SimpleTSGXLMS::SimplePeakComparator (OpenMS)
SimpleSearchEngineAlgorithm (OpenMS)
SimpleSVM (OpenMS)
SimpleTSGXLMS (OpenMS)
ROCCurve::simsortdec (OpenMS::Math)
SingleLinkage (OpenMS)
SingletonRegistry (OpenMS)
SiriusAdapterAlgorithm::Sirius (OpenMS)
SiriusAdapterAlgorithm (OpenMS)
SiriusMzTabWriter::SiriusAdapterHit (OpenMS)
SiriusMzTabWriter::SiriusAdapterIdentification (OpenMS)
SiriusMzTabWriter::SiriusAdapterRun (OpenMS)
SiriusFragmentAnnotation (OpenMS)
SiriusMSFile (OpenMS)
SiriusMzTabWriter (OpenMS)
SiriusMzTabWriter::SiriusSpectrumMSInfo (OpenMS)
SiriusFragmentAnnotation::SiriusTargetDecoySpectra (OpenMS)
SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects (OpenMS)
ConsensusFeature::SizeLess (OpenMS)
SizeUnderflow (OpenMS::Exception)
Software (OpenMS)
SoftwareVisualizer (OpenMS)
LPWrapper::SolverParam (OpenMS)
SONARScoring (OpenMS)
SourceFile (OpenMS)
SourceFileVisualizer (OpenMS)
SparseVector (Eigen)
SpecArrayFile (OpenMS)
MzMLFile::SpecInfo (OpenMS)
SpectraMerger::SpectraDistance_ (OpenMS)
IDMapper::SpectraIdentificationState (OpenMS)
SpectraIDViewTab (OpenMS)
SpectralMatch (OpenMS)
SpectralMatchScoreComparator (OpenMS)
QCBase::SpectraMap (OpenMS)
SpectraMerger (OpenMS)
SpectraSTSimilarityScore (OpenMS)
SpectraTreeTab (OpenMS)
Spectrum (OpenMS::Interfaces)
SpectrumAccessOpenMS (OpenMS)
SpectrumAccessOpenMSCached (OpenMS)
SpectrumAccessOpenMSInMemory (OpenMS)
SpectrumAccessQuadMZTransforming (OpenMS)
SpectrumAccessSqMass (OpenMS)
SpectrumAccessTransforming (OpenMS)
SpectrumAddition (OpenMS)
SpectrumAlignment (OpenMS)
SpectrumAlignmentDialog (OpenMS)
SpectrumAlignmentScore (OpenMS)
SpectrumAnnotator (OpenMS)
SpectrumCheapDPCorr (OpenMS)
SpectrumCount (OpenMS)
MzMLHandler::SpectrumData (OpenMS::Internal)
MzXMLHandler::SpectrumData (OpenMS::Internal)
MzIdentMLDOMHandler::SpectrumIdentification (OpenMS::Internal)
SpectrumIdentification (OpenMS)
MzIdentMLDOMHandler::SpectrumIdentificationProtocol (OpenMS::Internal)
SpectrumLookup (OpenMS)
SpectrumMeta (OpenMS::Interfaces)
SpectrumMetaDataLookup::SpectrumMetaData (OpenMS)
SpectrumMetaDataLookup (OpenMS)
SpectrumPrecursorComparator (OpenMS)
SpectrumSettings (OpenMS)
SpectrumSettingsVisualizer (OpenMS)
SplineInterpolatedPeaks (OpenMS)
SplinePackage (OpenMS)
SqliteConnector (OpenMS)
SqlOperationFailed (OpenMS::Exception)
SqMassFile::SqMassConfig (OpenMS)
SqMassFile (OpenMS)
SqrtMower (OpenMS)
squared_difference (KDTree)
squared_difference_counted (KDTree)
StablePairFinder (OpenMS)
FragmentMassError::Statistics (OpenMS)
PeptideAndProteinQuant::Statistics (OpenMS)
PSMExplainedIonCurrent::Statistics (OpenMS)
StatsCounter (OpenMS)
SteinScottImproveScore (OpenMS)
IdentificationDataConverter::StepOptCompare (OpenMS)
StopWatch (OpenMS)
FuzzyStringComparator::StreamElement_ (OpenMS)
StreamHandler (OpenMS)
LogStreamBuf::StreamStruct (OpenMS::Logger)
String (OpenMS)
StringDataArray (OpenMS::DataArrays)
StringListUtils (OpenMS)
StringManager (OpenMS::Internal)
StringUtilsHelper (OpenMS)
StringView (OpenMS)
DBSuitability::SuitabilityData (OpenMS)
LayerDataDefs::ProjectionData::Summary (OpenMS)
Summary (OpenMS)
SummaryStatistics (OpenMS::Math)
TargetedExperiment::SummaryStatistics (OpenMS)
SVOutStream (OpenMS)
SwathFile (OpenMS)
SwathLibraryStats (OpenMS)
SwathMap (OpenSwath)
SwathMapMassCorrection (OpenMS)
SwathQC (OpenSwath)
SwathTabWidget (OpenMS::Internal)
SwathWindowLoader (OpenMS)
SwathWizardBase (OpenMS)
SysInfo (OpenMS)
T
TableView (OpenMS)
Tagger (OpenMS)
Tagging (OpenMS)
TaggingVisualizer (OpenMS)
MetaboTargetedAssay::TargetDecoyGroup (OpenMS)
TargetedExperiment (OpenMS)
TargetedExperiment (OpenSwath)
TargetedSpectraExtractor (OpenMS)
File::TempDir (OpenMS)
File::TemporaryFiles_ (OpenMS)
TextFile (OpenMS)
FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern (OpenMS)
TheoreticalSpectrumGenerationDialog (OpenMS)
TheoreticalSpectrumGenerator (OpenMS)
TheoreticalSpectrumGeneratorXLMS (OpenMS)
ThresholdMower (OpenMS)
TIC (OpenMS)
TICFilter (OpenMS)
StopWatch::TimeDiff_ (OpenMS)
TMTEighteenPlexQuantitationMethod (OpenMS)
TMTElevenPlexQuantitationMethod (OpenMS)
TMTSixPlexQuantitationMethod (OpenMS)
TMTSixteenPlexQuantitationMethod (OpenMS)
TMTTenPlexQuantitationMethod (OpenMS)
TOFCalibration (OpenMS)
ToolDescription (OpenMS::Internal)
ToolDescriptionFile (OpenMS)
ToolDescriptionHandler (OpenMS::Internal)
ToolDescriptionInternal (OpenMS::Internal)
ToolExternalDetails (OpenMS::Internal)
ToolHandler (OpenMS)
ToolInfo (OpenMS)
ToolsDialog (OpenMS)
TOPPASBase (OpenMS)
TOPPASEdge (OpenMS)
TOPPASVertex::TOPPASFilenames (OpenMS)
TOPPASInputFileDialog (OpenMS)
TOPPASInputFileListVertex (OpenMS)
TOPPASInputFilesDialog (OpenMS)
TOPPASIOMappingDialog (OpenMS)
TOPPASMergerVertex (OpenMS)
TOPPASOutputFileListVertex (OpenMS)
TOPPASOutputFilesDialog (OpenMS)
TOPPASResource (OpenMS)
TOPPASResources (OpenMS)
TOPPASScene (OpenMS)
TOPPASSplitterVertex (OpenMS)
TOPPASToolConfigDialog (OpenMS)
TOPPASToolVertex (OpenMS)
TOPPASTreeView (OpenMS)
TOPPASVertex (OpenMS)
TOPPASVertexNameDialog (OpenMS)
TOPPASWidget (OpenMS)
TOPPBase (OpenMS)
TOPPFLASHDeconv
TOPPGNPSExport
TOPPOpenSwathBase (OpenMS)
TOPPASScene::TOPPProcess (OpenMS)
TOPPViewBase (OpenMS)
TOPPViewMenu (OpenMS)
TOPPViewOpenDialog (OpenMS)
TOPPViewPrefDialog (OpenMS::Internal)
TraceFitter (OpenMS)
Param::ParamIterator::TraceInfo (OpenMS)
TraMLFile (OpenMS)
TraMLHandler (OpenMS::Internal)
TraMLProduct (OpenMS::TargetedExperimentHelper)
TraMLValidator (OpenMS::Internal)
IDDecoyProbability::Transformation_ (OpenMS)
TransformationDescription (OpenMS)
TransformationModel (OpenMS)
TransformationModelBSpline (OpenMS)
TransformationModelInterpolated (OpenMS)
TransformationModelLinear (OpenMS)
TransformationModelLowess (OpenMS)
TransformationDescription::TransformationStatistics (OpenMS)
TransformationXMLFile (OpenMS)
TransitionGroupOpenMS (OpenMS)
TransitionHelper (OpenSwath)
TransitionPQPFile (OpenMS)
TransitionTSVFile (OpenMS)
IsotopeWaveletTransform::TransSpectrum (OpenMS)
TreeView (OpenMS)
TriqlerFile (OpenMS)
TriqlerFile::TriqlerLine_ (OpenMS)
TransitionTSVFile::TSVTransition (OpenMS)
TVControllerBase (OpenMS)
TVDIATreeTabController (OpenMS)
TVIdentificationViewController (OpenMS)
TVSpectraViewController (OpenMS)
TVToolDiscovery (OpenMS)
TwoDOptimization::TwoDOptFunctor (OpenMS)
TwoDOptimization (OpenMS)
U
UnableToCalibrate (OpenMS::Exception)
UnableToCreateFile (OpenMS::Exception)
UnableToFit (OpenMS::Exception)
UnimodXMLFile (OpenMS)
UnimodXMLHandler (OpenMS::Internal)
unique_xerces_ptr (OpenMS::Internal)
IdentificationSummary::UniqueID (OpenMS)
UniqueIdGenerator (OpenMS)
UniqueIdIndexer (OpenMS)
UniqueIdInterface (OpenMS)
CVTerm::Unit (OpenMS)
UnnormalizedComparator (OpenMS)
UnregisteredParameter (OpenMS::Exception)
UpdateCheck (OpenMS)
V
ValueTrait (OpenMS)
VecLowPrecision (OpenMS)
VersionInfo::VersionDetails (OpenMS)
VersionInfo (OpenMS)
TOPPASVertex::VertexRoundPackage (OpenMS)
W
Weights (OpenMS::ims)
WeightWrapper (OpenMS)
WindowMower (OpenMS)
WizardGUILock (OpenMS::Internal)
WrongParameterType (OpenMS::Exception)
X
XCorrArrayType (OpenSwath::Scoring)
XFDRAlgorithm (OpenMS)
OPXLDataStructs::XLPrecursor (OpenMS)
OPXLDataStructs::XLPrecursorComparator (OpenMS)
XMassFile (OpenMS)
XMLFile (OpenMS::Internal)
XMLHandler (OpenMS::Internal)
XMLValidator (OpenMS)
XQuestResultXMLFile (OpenMS)
XQuestResultXMLHandler (OpenMS::Internal)
XQuestScores (OpenMS)
XTandemInfile (OpenMS)
XTandemXMLFile (OpenMS)
Z
ZhangSimilarityScore (OpenMS)
ZlibCompression (OpenMS)
_
_Alloc_base (KDTree)
_Base_iterator (KDTree)
_Bracket_accessor (KDTree)
_Iterator (KDTree)
_Node (KDTree)
_Node_base (KDTree)
_Node_compare (KDTree)
_Region (KDTree)