IDFilter::PeptideDigestionFilter Class Reference

Filter Peptide Hit by its digestion product. More...

#include <OpenMS/FILTERING/ID/IDFilter.h>

Collaboration diagram for IDFilter::PeptideDigestionFilter:

Public Types
typedef PeptideHit	argument_type

Public Member Functions
	PeptideDigestionFilter (EnzymaticDigestion &digestion, Int min, Int max)
bool	operator() (PeptideHit &p) const
void	filterPeptideSequences (std::vector< PeptideHit > &hits)

Static Public Member Functions
static Int	disabledValue ()

Private Attributes
EnzymaticDigestion &	digestion_
Int	min_cleavages_
Int	max_cleavages_

Detailed Description

Filter Peptide Hit by its digestion product.

Member Typedef Documentation

argument_type

typedef PeptideHit argument_type

Constructor & Destructor Documentation

PeptideDigestionFilter()

PeptideDigestionFilter ( EnzymaticDigestion &  digestion, Int  min, Int  max  )

inline

Member Function Documentation

disabledValue()

static Int disabledValue ( )

inlinestatic

filterPeptideSequences()

void filterPeptideSequences ( std::vector< PeptideHit > &  hits )

inline

operator()()

bool operator() ( PeptideHit &  p ) const

inline

Filter function on min max cutoff values to be used with remove_if returns true if peptide should be removed (does not pass filter)

References EnzymaticDigestion::filterByMissedCleavages(), PeptideHit::getSequence(), and AASequence::toUnmodifiedString().

Member Data Documentation

digestion_

EnzymaticDigestion& digestion_

private

max_cleavages_

Int max_cleavages_

private

min_cleavages_

Int min_cleavages_

private